Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1352 ATGTTCAACTCCATTATGGCAAAAATACTCACACTCTGCATTCTCCTTCTGGCCTCAATCCTCATAAACTCTCAACAGCAAGAACTCTTCTTTGAAGGGTTCAAAGATGCCATTTCAGGCAACAACATAAGCATAGACGGAGGTGCAGTAATCGAAAACTGTGGAATACTTCGCCTCACAAACGACACTCACATGCTTGGCCACGCGTTTTACTCAACCCCAATTCGCTTAAAGAACTCCACCAACGCCAAAGTTTTCTCCTTTTCCACCGCTTTCGCTTTTGCAATAACAAGCAGCGACCCAAAACAAGGTGGGCATGGCTTCGCCTTCGCCATATCCCCCTCAAAAGTGCTTCCTGGTGCTTATCCCAGTCAGTACCTTGGCCTTCTCAACCCACACGATGTTGGGAACTTCTCAAACCACCTTTTTGCTGTTGAGTTCGACACTGTCCAAGACTATGAATTTTATGATATCAATGGCAACCACGTGGGCATCAACTTGAACAGCATGGTGTCCAAAAAGTCTGTTCCCGCTGCTCAATTCACAGATGGGTCATCCAAACAGGACCTCTATTTGAAGTGTGGTTCGGTGATTCAAGCATGGGTGGACTATGATTCCTCCACCAAACAATTGGATGTTAGACTTTCCTCAACCTCCTCGAAACCTCGTTCCCCAATCTTGTCTTGCAAAGTTGATCTCTCACCAATTCTCAAAGATGACATTTATGTTGGGTTTTCAGCTTCAACGGGGACGCTAGCGAGCTCACACTATATCTTGGGTTGGAGCTTTAAGATCAATGGAGAAGTCAAATCTTTGAATTTGAATAGTTTACCATCACTTCTTACTTCTAACCACCACAAAAAAGCCACGATCGCGGGAATTACGGTTTCTTTTGCTATTTTAGCAATAACAGCTTCAATTGGGTTAACGATCTATGTAGTCAGAAAGATAGAGAACGACGATGCTATTGAACCTTGGGAACTTGAAGTGGGTCCCCACAGGTTCTCATACGAGGAGCTGAAGCAAGCAACAAAGGGCTTCAACGAGAAGCAGTTAATTGGGTTTGGGGGTTTTGGTCGAGTTTACAAAGGGGTTCTCCGAAACTCCAACACCCAAGTGGCAGTGAAGAGAATTTCACAAGACTCAAAAGAAGGGTTACAACAATTCATGTCGGAGATAGAAACCATTGGTCGGCTCCGACATAGGAACCTAGTACAATTACTAGGTTGGTGTCGGAAGCATTGGAATCTCTTACTTGTGTATGATTTCATGCCCAATGGAAGCCTGGACAAGTGCTTATTCGAGAAACCCAAAGAGATTTTAAGGTGGGAACAGAGGTTCAAGATCATAAAGGGAGTAGCTCGGGGTCTTGTGTATTTACACGAGGAGTGGGAACAAGCGGTGATTCACAGAGACATAAAAGCAGGGAATGTGCTGCTGGATTCCGAAATGAATGGAAGGTTGGGCGATTTTGGTTTGGCGAAGTTGTATGAGCACGGTGAGCACGTGCGCACGACTCGCGTGGTGGGCACGTTGGGGTACTTGGCGCCGGAGTTAACACGGACGGGGAAGCCCACGACGAGTTCTGATGTATTTGCGTTTGGGGCATTGTTGTTGGAAGTGGTGTGTGGGAGAAGGCCCATTGAGCCCAAGGCGTTGCCGGAGGAGCTTATATTGGTGGATTGGGTGAGGGAACGATGGGAGATGGGGGAGGAGGCTCTTTTGGAAGTGATGGACCCCAATTTGGGTGAGGCGTTTGATCGAGAGCAGGCCTTGACGGTGCTGAGATTGGGCCTAATGTGTTCTAATGATGAGCCCATGGAACGGCCCAGTATGAGGCAGGTGGTGATGTATTTGGAGGGGAGGTAG 1869 0.4708 MFNSIMAKILTLCILLLASILINSQQQELFFEGFKDAISGNNISIDGGAVIENCGILRLTNDTHMLGHAFYSTPIRLKNSTNAKVFSFSTAFAFAITSSDPKQGGHGFAFAISPSKVLPGAYPSQYLGLLNPHDVGNFSNHLFAVEFDTVQDYEFYDINGNHVGINLNSMVSKKSVPAAQFTDGSSKQDLYLKCGSVIQAWVDYDSSTKQLDVRLSSTSSKPRSPILSCKVDLSPILKDDIYVGFSASTGTLASSHYILGWSFKINGEVKSLNLNSLPSLLTSNHHKKATIAGITVSFAILAITASIGLTIYVVRKIENDDAIEPWELEVGPHRFSYEELKQATKGFNEKQLIGFGGFGRVYKGVLRNSNTQVAVKRISQDSKEGLQQFMSEIETIGRLRHRNLVQLLGWCRKHWNLLLVYDFMPNGSLDKCLFEKPKEILRWEQRFKIIKGVARGLVYLHEEWEQAVIHRDIKAGNVLLDSEMNGRLGDFGLAKLYEHGEHVRTTRVVGTLGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPIEPKALPEELILVDWVRERWEMGEEALLEVMDPNLGEAFDREQALTVLRLGLMCSNDEPMERPSMRQVVMYLEGR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1352 622 CDD STKc_IRAK 353 621 - -
Apr9g1352 622 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
Apr9g1352 622 Gene3D - 29 280 - -
Apr9g1352 622 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE IV.2-LIKE PROTEIN 7 621 - -
Apr9g1352 622 Gene3D Transferase(Phosphotransferase) domain 1 424 622 - -
Apr9g1352 622 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 281 IPR013320 -
Apr9g1352 622 ProSiteProfiles Protein kinase domain profile. 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1352 622 PANTHER - 7 621 - -
Apr9g1352 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Apr9g1352 622 Pfam Protein kinase domain 347 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1352 622 SUPERFAMILY Protein kinase-like (PK-like) 329 618 IPR011009 -
Apr9g1352 622 Pfam Legume lectin domain 30 277 IPR001220 GO:0030246
Apr9g1352 622 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
Apr9g1352 622 SMART serkin_6 347 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1352 622 CDD lectin_legume_LecRK_Arcelin_ConA 31 267 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1352 Apr-Chr9 23142390 23144346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1352 22 620 Receptor kinase-like Gene Family AT3G55550 59.174 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr9g1352 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1352 - - gmx:100787552 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1352 9 23142390 23144346 Apr10g2039 10 33222039 33224429 ECH
Apr4g1925 4 27323786 27325831 Apr9g1352 9 23142390 23144346 ECH
Apr9g1352 9 23142390 23144346 Apr9g1352 9 23142390 23144346 ECH