Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1347 ATGTCTTCCCATTGGTGTCACAGGTGCAACCGATTTGTCAGAGCATGGAGACAACATGGCATTACAACGTGTCCCGATTGCGACAGCGGATTCGTCGAAGAAATCGAACATCCGAACCGGTTTCTCACCGGGGAAGGTCGCCGCCGTCGGTTCCCTTCGGCGGCGGCAATGTACATGATCGGCAACCGGACCGGTTCTGATCAAAATTCCCGTTCCTCTCGCCGGCGGAATTGCATAAACACCGGCGGCAACCGTTCACCGTTCAACCCTGTTATCATGTTCCGCGGCGAAGGGTCAAGTAGTCGTGACCGTGGCTTCGAGCTTTTCTACGACGACGGTGCCGGTTCCGGTCTGCGACCGTTACCTCAGAGAATGTCGGAGGTTCTTCTGGGTTCAGGGTTCGATAGAGTAATGGAACAGCTTTCACACATGGAAGCCAACGGTAGTGTTGGGAGACACGGCCAGAATCCCCGTCCGGCGTCAATATCTGCCGTGGAGTCGTTGCCGGCGATTGAGATAAATGAAACCCACATGGCAACAGAGTCACATTGTGCGGTTTGCAAAGAGCCTTTTGAACTTGGCATCGCAGCGAAGGAAATGCCATGCAAACACATTTACCATCATGAATGTATCTTACCATGGCTTGCAATTCGTAATTCTTGCCCTGTTTGTAGACACGAATTGCCCTCTGAAGAAGCGAACGGGCGTTTGGAGCAAATCAACGAAGAAGAGAACGTGGGGTTGACTGTTTGGAGGTTACCGGGTGGTGGGTTTGCGGTGGGAAGGTATGGTGGTGGAAGAAGAGGTGAGGTTCCTCTTGTGTACACAGAAGTTGATGGTGGGTTTAACTTTAACAGTGTTGTTGGGGAACCAAGGAGGGTTTCTTGGTCGGTTTCTTCTTCTAGAGGGAGAGGAAGTGGTGGTTCTTTGCGAAGAATGTTTCATAGTTTGTTTGCTTGCTTCAGAAGTGGTAGTGTTGTTGGGCCTCATAGTTCTGTTTCTATTAGAGAGCATTCTAGAACTATGAGGAGTGCTAGTGCTATTGCTACTACTTCTCTTTATAATGTGGATCCCTCGCCACGTTCGCGTAGGACTTGGTCTATGGATGTAAACAGTGGAACTAGACCCTGGTAA 1134 0.5035 MSSHWCHRCNRFVRAWRQHGITTCPDCDSGFVEEIEHPNRFLTGEGRRRRFPSAAAMYMIGNRTGSDQNSRSSRRRNCINTGGNRSPFNPVIMFRGEGSSSRDRGFELFYDDGAGSGLRPLPQRMSEVLLGSGFDRVMEQLSHMEANGSVGRHGQNPRPASISAVESLPAIEINETHMATESHCAVCKEPFELGIAAKEMPCKHIYHHECILPWLAIRNSCPVCRHELPSEEANGRLEQINEEENVGLTVWRLPGGGFAVGRYGGGRRGEVPLVYTEVDGGFNFNSVVGEPRRVSWSVSSSRGRGSGGSLRRMFHSLFACFRSGSVVGPHSSVSIREHSRTMRSASAIATTSLYNVDPSPRSRRTWSMDVNSGTRPW* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1347 377 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Apr9g1347 377 SMART ring_2 184 224 IPR001841 -
Apr9g1347 377 MobiDBLite consensus disorder prediction 61 84 - -
Apr9g1347 377 Pfam Protein of unknown function (DUF1117) 246 344 IPR010543 -
Apr9g1347 377 Pfam zinc-ribbon 3 35 IPR039525 GO:0061630
Apr9g1347 377 Pfam Ring finger domain 183 225 IPR001841 -
Apr9g1347 377 MobiDBLite consensus disorder prediction 62 84 - -
Apr9g1347 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 319 - -
Apr9g1347 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 319 - -
Apr9g1347 377 SUPERFAMILY RING/U-box 164 230 - -
Apr9g1347 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 231 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1347 Apr-Chr9 23103584 23104717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1347 120 234 C3H Transcription Factor Family AT5G01980 41.739 1.71e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1347 - K11982 gmx:100789228 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1347 9 23103584 23104717 Apr10g2033 10 33186715 33188355 ECH
Apr4g1914 4 27126600 27128789 Apr9g1347 9 23103584 23104717 ECH
Apr9g1347 9 23103584 23104717 Apr9g1347 9 23103584 23104717 ECH