Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1341 ATGCCTTTGGTCAACAAAATCATCGCCATTGTCTCCATCATAACCCTCTTCACTTCCACCCAAGCCAGAATCCCAGGCGCGTACACGGGCGGCGCGTGGCAAAGTGCCCATGCCACATTCTACGGTGGGAGCGACGCCTCCGGCACAATGGGCGGCGCGTGTGGCTATGGCAACTTATACAGCCAAGGCTACGGCGTAAACACAGCGGCACTGAGCACCGCGCTTTTCAACAAAGGGTTAAGTTGTGGAGCTTGCTTCGAGATTAAGTGTGCCGATGACCCCAACTGGTGCCACGCCGGCAGCCCATCAATCTTCATAACCGCCACCAACTTCTGTCCCCCAAACTACGCTCTTCCCAGCGACAATGGGGGTTGGTGTAACCCTCCACGCCCACACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCTGAGTACCGTGCCGGCATCGTTCCCGTCTCTTTCCGCCGGGTGCCTTGTCGGAAGCAGGGAGGGATGAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGCGCAGGGGATATCGTGAGGACGAGCGTTAAAGGGTCGAGGACTGGGTGGATGAGCATGAGCCGCAACTGGGGTCAAAATTGGCAGTCTTGGCAATTTGGCCAAACCTTCTCTGGCAAAAACTTTAGGGTCTAA 690 0.558 MPLVNKIIAIVSIITLFTSTQARIPGAYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGLSCGACFEIKCADDPNWCHAGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVRTSVKGSRTGWMSMSRNWGQNWQSWQFGQTFSGKNFRV* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1341 229 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Apr9g1341 229 PANTHER EXPANSIN-A15 6 215 IPR002963 GO:0009664
Apr9g1341 229 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Apr9g1341 229 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Apr9g1341 229 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Apr9g1341 229 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Apr9g1341 229 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Apr9g1341 229 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Apr9g1341 229 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Apr9g1341 229 Pfam Expansin C-terminal domain 166 222 IPR007117 -
Apr9g1341 229 SMART dpbb_1 68 155 IPR007112 -
Apr9g1341 229 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Apr9g1341 229 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Apr9g1341 229 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Apr9g1341 229 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Apr9g1341 229 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Apr9g1341 229 SUPERFAMILY PHL pollen allergen 164 223 IPR036749 -
Apr9g1341 229 PANTHER EXPANSIN 6 215 - -
Apr9g1341 229 Gene3D - 166 227 IPR036749 -
Apr9g1341 229 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 229 IPR007117 -
Apr9g1341 229 Pfam Lytic transglycolase 68 155 IPR009009 -
Apr9g1341 229 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Apr9g1341 229 Gene3D - 19 161 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1341 Apr-Chr9 23009635 23011717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1341 6 229 Expansin Gene Family AT2G39700 74.016 7.30e-139 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1341 - - gmx:100809018 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1341 9 23009635 23011717 Apr10g2025 10 33087615 33089347 ECH
Apr4g1898 4 26805047 26808522 Apr9g1341 9 23009635 23011717 ECH
Apr2g2300 2 27978586 27980438 Apr9g1341 9 23009635 23011717 ECH
Apr3g0192 3 3625771 3627704 Apr9g1341 9 23009635 23011717 ECH
Apr9g1341 9 23009635 23011717 Apr9g1341 9 23009635 23011717 ECH
Apr10g2025 10 33087615 33089347 Apr9g1341 9 23009635 23011717 PCT