Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1335 ATGCGAAGGAACAGTCCAGCGTACTACAGTCCTCCTCGGAGAGGATATGGTGGGAGAGGAGGGTCTGGTAGGAGGGGATACGGTGGAGGTAGGCGCAGGGAAAACAGCAATGGAAGCCTTTTGGTTCGGAACATTCCCCTCGATTGCAGACCCGAGGAGCTTCGAGTCCCTTTCGAGCGATTTGGACCTGTTCGTGATGTTTACATACCAAAGGACTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAATACCATATGAATAGACAAATTTTTGCTGGAAGGGAAATATCTGTTGTCGTGGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGCCAAAGATCTAGGTTCAGAGGACCGACAAGCTATGGAGGGCGAAGGTCTTCTTATTATGGGCGCTCTCGGTCTCGCTCAATTAGCAGATCACGCTCGCCACCTTACCACTCTGGTTCTAGAAATCGATATCGTTCAAGCAGGTCCTATTCTCCTGGTCCAAGACGGCAAAGTGACTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCACCCTAGATCACCAAGAGATCCTCCCAGAGAGCGAGATGGTGATCAAAAGCATAGAACATATTCTCCAGCTTATGGAAATGGGATTGAACAGGATCAAAGCAATGGATATGCTGAGAAATCTATATACAAGTCTGAGGCTGATCGAGGCCAGTGGAAGTCATCCTTACGTAGAGCATCAAGATCACCCCTAGGATCTAGATCAAGATCTGTTGATTTATCACCCAGACATGGAAGATGA 819 0.4823 MRRNSPAYYSPPRRGYGGRGGSGRRGYGGGRRRENSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRQRSRFRGPTSYGGRRSSYYGRSRSRSISRSRSPPYHSGSRNRYRSSRSYSPGPRRQSDYSVSPRRQAEHPRSPRDPPRERDGDQKHRTYSPAYGNGIEQDQSNGYAEKSIYKSEADRGQWKSSLRRASRSPLGSRSRSVDLSPRHGR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1335 272 PANTHER OS02G0252100 PROTEIN 23 268 - -
Apr9g1335 272 MobiDBLite consensus disorder prediction 116 272 - -
Apr9g1335 272 SUPERFAMILY RNA-binding domain, RBD 35 145 IPR035979 GO:0003676
Apr9g1335 272 Gene3D - 29 151 IPR012677 -
Apr9g1335 272 MobiDBLite consensus disorder prediction 1 37 - -
Apr9g1335 272 MobiDBLite consensus disorder prediction 186 212 - -
Apr9g1335 272 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 268 - -
Apr9g1335 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Apr9g1335 272 MobiDBLite consensus disorder prediction 219 233 - -
Apr9g1335 272 MobiDBLite consensus disorder prediction 140 185 - -
Apr9g1335 272 SMART rrm1_1 39 112 IPR000504 GO:0003723
Apr9g1335 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1335 Apr-Chr9 22969469 22972992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1335 7 100 Eukaryotic Initiation Factors Gene Family AT3G11400 38.298 6.38e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1335 K12900 - gmx:100804294 367.081