Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1333 ATGGGGTGTTGCTTCAGTGCTAGGATCAAAGCTGAGAGCCCTCCACGAAATGGTTTGAATTCCAAGGATGATGGCTTGAGCAGCAAGGTCTCCACCCCCTCAGTGCCACCAACTCCACGGACGGAGGGTGAGATCTTGAAGTCCTCCAACATGAAGAGCTTCACCTTTGGTGAGCTTAAAATTGCTACTAGGAACTTTCGTCCGGATAGTGTGGTGGGTGAAGGTGGGTTTGGTTGTGTTTTTAAGGGGTGGATTGATGAGCAGTCACTTGCACCAGTTAGACCAGGGACTGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTTTGCAGGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCATCATCCTAATCTCGTGAAACTGATTGGTTACTGCTTAGAGGATGACCAAAGGCTTTTGGTGTATGAGTTTTTGACCAAAGGAAGTTTGGATAATCATCTGTTTAGGAGAGCTTCTTATTTTCAACCACTTTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAACTTCAAATATCTTGCTTGATTCAGCTTACAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCTGGTGATAAGAGCCATGTCTCTACAAGGGTAATGGGCACATATGGCTATGCCGCTCCTGAATATATGGCCACAGGTCACTTAACCAAAAAGAGTGATGTATACAGCTTTGGGGTAGTTCTCCTTGAAATCATGTCTGGAAAACGTGCACTTGACAACAACAGGCCATCTGGGGAGCACAATTTAATTGAGTGGGCCAAACCATACCTCAACAGCAAACGCAGGATCTTCCAAGTCATGGATGCACGCATTGAAGGCCAATACACATTGCGTGAAGCAATGAAAGTAGCTAACCTTGCAGTTCAATGCCTATCTGTGGAACCAAGATTTAGACCAAAAATGGATGAAGTGGTGAGAACATTGGAAGAACTTCTGGATTCTGATGACAAAGCTGGCGAAGGAAGCTCAAGAGGTCAAGCTGTCAAAAGGAATGGCCATAGCTCAAGTAGCAGTGGCCCAAGACAACACAGAAGTAAACATCATCGTGAAACAACAGTGACACACAAGTAA 1191 0.4492 MGCCFSARIKAESPPRNGLNSKDDGLSSKVSTPSVPPTPRTEGEILKSSNMKSFTFGELKIATRNFRPDSVVGEGGFGCVFKGWIDEQSLAPVRPGTGMVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKTSNILLDSAYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYTLREAMKVANLAVQCLSVEPRFRPKMDEVVRTLEELLDSDDKAGEGSSRGQAVKRNGHSSSSSGPRQHRSKHHRETTVTHK* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1333 396 PANTHER KINASE 1B 18 389 - -
Apr9g1333 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Apr9g1333 396 ProSiteProfiles Protein kinase domain profile. 66 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1333 396 Gene3D Phosphorylase Kinase; domain 1 41 151 - -
Apr9g1333 396 ProSitePatterns Protein kinases ATP-binding region signature. 72 104 IPR017441 GO:0005524
Apr9g1333 396 SUPERFAMILY Protein kinase-like (PK-like) 39 348 IPR011009 -
Apr9g1333 396 MobiDBLite consensus disorder prediction 380 396 - -
Apr9g1333 396 MobiDBLite consensus disorder prediction 10 43 - -
Apr9g1333 396 Gene3D Transferase(Phosphotransferase) domain 1 152 372 - -
Apr9g1333 396 MobiDBLite consensus disorder prediction 352 396 - -
Apr9g1333 396 CDD STKc_IRAK 72 351 - -
Apr9g1333 396 Pfam Protein tyrosine and serine/threonine kinase 70 348 IPR001245 GO:0004672|GO:0006468
Apr9g1333 396 MobiDBLite consensus disorder prediction 20 43 - -
Apr9g1333 396 PANTHER OS01G0588500 PROTEIN-RELATED 18 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1333 Apr-Chr9 22960400 22964051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1333 1 348 Glycoside Hydrolase AT3G07070 45.879 9.94e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr9g1333 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1333 - - gmx:100775335 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1333 9 22960400 22964051 Apr9g1333 9 22960400 22964051 ECH
Apr10g2022 10 33067958 33070876 Apr9g1333 9 22960400 22964051 PCT