Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1324 ATGGAAACTCCTCCTCCATCTTCACCACCCGATGCGGCAGAGCCTACGCCGGTGGCCGTACGGAGAGCTTTGGAGTTGCTCCAGCTGAACGACCCCGTTTTGAGGGTCGAAGCCGCTCGGGACATTCGCCGCCTCACCAAAACCTCCCACCGTTGCCGCCGTCAGCTCCGTCAAGCCGTTGCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCATGAACCAGCTCTTCTCGCTCTGCTTAACCTCGCCGTGCAAGACGAAAGGAACAAAATTAACATTGTTAAAGCTGGTGCATTAGAGCCAATAGTTAGTTTCCTCAAGTCGCAAAATCCAAATCTGCAAGAGTATGCAACTGCATCATTGTACACTCTATCTGTCTCTCCCACCAACAAACCAATTATTAGTGCTTGTGGCACCATTCCTCTTCTTGTGAATATTCTTAGAGATGGAAGCCCGCAAGCTAAAGCTGATGCGGTAATGGCGCTCTCCAATTTATCAACACATCTTGATAACCTAAGCATCATTCTTGAAACAAATGCAATCACCTTTATAGTAAATCTTCTTAAAACCTGTAAAAAGTCCTCAAAAACAGTTGAAAAATGTGCTGCTTTGATAGAATCTTTGGTGGGTTATGATGAAGGCAGAACTGCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTTGAAGTTCTTGAAAGTGGCACCCCCAAAAGTAAGGAACATGCTGTTGGGGCACTGCTAACAATGTGCCAAAGTGATAGGTGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACAGTTCAAGGAACCCCCAAGTCTCAGCCAAAAGCACGTACCCTTTTGCAGTTACTAAGAGAGTCACCTTATTCAAGACCTGAAAATGAACCTGACACACTAGAGAACATCATGTGTGACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCACTTGTATGCACCCCTAGTGATATGCCAATTACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAA 1125 0.4587 METPPPSSPPDAAEPTPVAVRRALELLQLNDPVLRVEAARDIRRLTKTSHRCRRQLRQAVAPLVSMLRVDSPEFHEPALLALLNLAVQDERNKINIVKAGALEPIVSFLKSQNPNLQEYATASLYTLSVSPTNKPIISACGTIPLLVNILRDGSPQAKADAVMALSNLSTHLDNLSIILETNAITFIVNLLKTCKKSSKTVEKCAALIESLVGYDEGRTALTSEEGGVLAVVEVLESGTPKSKEHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPENEPDTLENIMCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPITSCASEVSSK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1324 374 Gene3D - 10 356 IPR011989 -
Apr9g1324 374 PANTHER U BOX DOMAIN-CONTAINING 14 357 - -
Apr9g1324 374 Pfam Armadillo/beta-catenin-like repeat 90 127 IPR000225 GO:0005515
Apr9g1324 374 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 58 100 IPR000225 GO:0005515
Apr9g1324 374 SUPERFAMILY ARM repeat 20 328 IPR016024 -
Apr9g1324 374 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 141 183 IPR000225 GO:0005515
Apr9g1324 374 SMART arm_5 215 255 IPR000225 GO:0005515
Apr9g1324 374 SMART arm_5 89 129 IPR000225 GO:0005515
Apr9g1324 374 SMART arm_5 130 170 IPR000225 GO:0005515
Apr9g1324 374 SMART arm_5 48 87 IPR000225 GO:0005515
Apr9g1324 374 SMART arm_5 171 213 IPR000225 GO:0005515
Apr9g1324 374 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 100 137 IPR000225 GO:0005515
Apr9g1324 374 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1324 Apr-Chr9 22885278 22889259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1324 59 297 U-box Gene Family AT2G23140 35.983 1.04e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1324 - - gmx:100793971 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2013 10 33008613 33012364 Apr9g1324 9 22885278 22889259 PCT