Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1323 ATGGCACTCTCTTATGGGGTCAATAATGAATACCAAAAATCTGTGGTTGAAGAGGAAGATGGCTCACAGAACACTAATGGGCTCAGCAATGATTCAGCTTCAGCCATAACCCGTTCTCCTCCTCTGTGTGGCAATGGCAATGGGTATGTTTATAAGGGCACAAATTGCCAACTTGAAGAAGCTGAATCTCTGATTAATTTCAAAGCCAATGAGTGCAACAACCTCATGCAAGGTAGTGAATCTTTGCTTAGCTTTAACCAAAGTTGGCTGGTCTCCAAAGCGAGTAATTTGCATGAAGGTTATAACCAATGGAACCATGTTAGTCCTAGAAGCACCACAGACATGCGCCTAATGCATAATTTTAGTTGCTTTGAAACTGCCAGTGGCTATAGCTCCATATTCCATAGTGCAAGAGAGAAACAACATGCTGAAAGTTCATCTGGGTGGCTATTTTCTGAACCAAATGTCCCTAGTGATAGCCTACATGAGTCAGTAGCACAAGAATTGGTCTTGAGGAAGCGCTCTTCTATGGGAGAGAACATGCAAGCTGCCAATGCGAAGAAGCCATGCACTGTTGCAAGTAAAGCTGCAAAACCTAAGTCAAACCCATCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTACAAGAACTGGTACCCAACGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTGCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTAAGACAAGCCATTGATGTCATTCTTTCATCGCAAAGATGA 873 0.4296 MALSYGVNNEYQKSVVEEEDGSQNTNGLSNDSASAITRSPPLCGNGNGYVYKGTNCQLEEAESLINFKANECNNLMQGSESLLSFNQSWLVSKASNLHEGYNQWNHVSPRSTTDMRLMHNFSCFETASGYSSIFHSAREKQHAESSSGWLFSEPNVPSDSLHESVAQELVLRKRSSMGENMQAANAKKPCTVASKAAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDVILSSQR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1323 290 Gene3D - 198 260 IPR036638 GO:0046983
Apr9g1323 290 SMART finulus 209 258 IPR011598 GO:0046983
Apr9g1323 290 Pfam Helix-loop-helix DNA-binding domain 213 253 IPR011598 GO:0046983
Apr9g1323 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 252 IPR011598 GO:0046983
Apr9g1323 290 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 284 - -
Apr9g1323 290 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 284 - -
Apr9g1323 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 262 IPR036638 GO:0046983
Apr9g1323 290 MobiDBLite consensus disorder prediction 182 214 - -
Apr9g1323 290 CDD bHLH_AtIND_like 204 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1323 Apr-Chr9 22873721 22875173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1323 45 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.833 2.12e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g1323 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1323 - - gmx:106795957 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2012 10 32997600 32999040 Apr9g1323 9 22873721 22875173 PCT