Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1292 ATGACGGGGAACAAGAAGGCGTCAGGGGAAGCGGGAGAGGGAGAGGGGAAGCAAACGACGTCGTGTTCGAGATCTCTTTCTTCTTCTTCGTCATCTACCACGTCGTCCTCGTCTTCTTCGGATGAGAGAGAGTACGAAGTGCAGGACCTGCGGGATCGGTTGAAATCGTCTCGAGGAAGCCGATTCGATTTGATAGAGAGCGAGTTGGGACTCAACTCCAGATGGACCAAGTTCAGTCGCCTTGCGCTTCTCCATGGAATCCGAGGCTTCTCCAGAGACTTCGTTATTCATCCCGACAACAGGTGGTATCGGGCTTGGACTAAATTCATATTGCTATGGGCAGTGTATTCATCCTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGCCTTCCTGAGAATCTCTTTATACTGGACATCATTGGACAAATAGCTTTCCTTGTGGACATTGTTTTGCAGTTCTTTGTTGCTTTTAGAGACAGTCAGACTTATCGTATGGTCCACAAGCGAACCCATATTGCTCTGCGGTACGTAAAATCTGGCTTTATCCTTGATCTTCTTGGATGTATGCCGTGGGACATCATCTTCAAGGCTTGTGGTCGAAGAGAGGAAGTAAGGTACCTTTTGTGGATCAGATTATATCGGGTGCGGAAAGTCACAGATTTTTTCCACAAGTTGGAGAAGGACATTCGTGTGAATTACATTATTACTCGGATTGTGAAACTGATAGTGGTTGAACTCTACTGCACCCACACAGCAGCCTGCATTTTTTACTATTTGGCTACTACACTACCTGAATCCCAAGAGGGGTACACGTGGATAGGAAGTTTACAACTGGGTGACTACAGTTATTCACATTTCAGGGAAATTGATCTTTGGAAGCGCTACACGACATCTTTGTATTTCGCTATTGTTACAATGGCTACAGTTGGCTATGGAGATATACATGCAGTAAATATGAGGGAAATGATATTCATAATGATATATGTGTCGTTTGACATGGTTCTTGGTGCTTATTTGATTGGTAACATGACAGCTTTGATAGTTAAGGGATCTAAGACTGAAAAGTATAGGGACAAGATGACAGATCTTATGAAATATATGAACAGAAATAGACTTGGAAGGGATATCCGTGACCAAATAAAAGGCCATGTACGCTTACAGTATGAGAGTAGCTACACTGAGGCTGCTGTCATTCAGGATATCCCTATTTCTATTCGAGCTAAGATATCCCAAACATTATATTTGCCATGCATTGAAAAGGTTTCTCTTTTTAAAGGGTGTTCTTCAGAATTCGTTAATCAGATCGTTATTAGGCTGCATGAGGAGTTCTTTCTTCCAGGGGAAGTTATAATGGAACAAGGAAATGTTGTAGATCAACTCTATTTTGTCTGTCATGGTGTGCTGGAGGAAGTAGGCATAGCTGAGGATGGGTCTGAAGAAACTGTTTCACTTCTGGAGCCTAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGTGTTTGTGAACTGTGTAGGCTCCTGCGACTTGATAAACAATCATTTACAAATATCCTAGATATATACTTCTATGATGGAAGGAAAGTATTAAACAACCTTCTAGAGGCAAAAGAGTCTTTTCGAGGTAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCAAGAAGCTGAGCTTGCTTTGAAGGTCAATAGTGCAGCTGTTAATGGGGATCTGTATCAACTAAAAGGTTTGATTCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCTAGAGGATATGAAGACATCACACTTTTCCTTATTCAAGAAAAAGTAGACGTCAATATTAGAGATAACTTCGGGAACACACCCTTACTTGAAGCAATTAAGAATGGACATGATCGGGTTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTATGAAGATAGAAAATGCTGGTAGTTTTTTGTGTATAGCAGTTGCGAGGGGAGATTCAGATTTTCTTAAAAGACTTTTATGTAATGGCTTGGATCCCAACTTGAAAGATTACGACTACCGAAGCCCTCTTCATGTTGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGCTATTAGAAGCCGGAGCTAGTGTGTTTACCAAAGACAGATGGGGAAATACCCCGGTCGATGAAGCCCGGATGTGTGGAAATAAGAATTTGATCAAGCTACTGGAAGATGCAAAATCTGCTCAACTGTCAGAATTCCCATATCCCTCCCAGGAATTTACAGATAAAATGCACCCAAAGAAGTGCACAATGTTCTCTTTCCACCCGTGGGATCCAAAAGATAATAGAAGACACGGAATTGTATTATGGGTTCCACACACCATTGAAGAGCTAATCAAAACAGCAGCAGAACACACAGATTTTTCTGGCAATTCTTGTATTTTATCCGAAGATGCTGGAAAAATTACTGATGTGGGTATGATTAAGGATGGTCAGAAGCTGTATTTAGTGCATGAAACGAATTAG 2550 0.4169 MTGNKKASGEAGEGEGKQTTSCSRSLSSSSSSTTSSSSSSDEREYEVQDLRDRLKSSRGSRFDLIESELGLNSRWTKFSRLALLHGIRGFSRDFVIHPDNRWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAFRDSQTYRMVHKRTHIALRYVKSGFILDLLGCMPWDIIFKACGRREEVRYLLWIRLYRVRKVTDFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLQLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKYRDKMTDLMKYMNRNRLGRDIRDQIKGHVRLQYESSYTEAAVIQDIPISIRAKISQTLYLPCIEKVSLFKGCSSEFVNQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIAEDGSEETVSLLEPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKVLNNLLEAKESFRGKQLESDITFHIGKQEAELALKVNSAAVNGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQEKVDVNIRDNFGNTPLLEAIKNGHDRVASLLVREGASMKIENAGSFLCIAVARGDSDFLKRLLCNGLDPNLKDYDYRSPLHVAAAEGLYFMAKLLLEAGASVFTKDRWGNTPVDEARMCGNKNLIKLLEDAKSAQLSEFPYPSQEFTDKMHPKKCTMFSFHPWDPKDNRRHGIVLWVPHTIEELIKTAAEHTDFSGNSCILSEDAGKITDVGMIKDGQKLYLVHETN* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1292 849 MobiDBLite consensus disorder prediction 14 41 - -
Apr9g1292 849 Pfam Ion transport protein 104 349 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr9g1292 849 ProSiteProfiles cAMP/cGMP binding motif profile. 424 544 IPR000595 -
Apr9g1292 849 Gene3D Helix hairpin bin 351 407 - -
Apr9g1292 849 PRINTS Ankyrin repeat signature 601 616 IPR002110 GO:0005515
Apr9g1292 849 PRINTS Ankyrin repeat signature 713 727 IPR002110 GO:0005515
Apr9g1292 849 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Apr9g1292 849 SUPERFAMILY cAMP-binding domain-like 352 542 IPR018490 -
Apr9g1292 849 MobiDBLite consensus disorder prediction 1 46 - -
Apr9g1292 849 ProSiteProfiles Ankyrin repeat region circular profile. 697 729 - -
Apr9g1292 849 Gene3D - 666 760 IPR036770 -
Apr9g1292 849 ProSiteProfiles Ankyrin repeat profile. 697 729 IPR002110 GO:0005515
Apr9g1292 849 ProSiteProfiles KHA domain profile. 776 849 IPR021789 -
Apr9g1292 849 Gene3D Jelly Rolls 408 547 IPR014710 -
Apr9g1292 849 SUPERFAMILY Voltage-gated potassium channels 97 349 - -
Apr9g1292 849 ProSiteProfiles Ankyrin repeat profile. 633 665 IPR002110 GO:0005515
Apr9g1292 849 CDD CAP_ED 424 538 IPR000595 -
Apr9g1292 849 SMART cnmp_10 424 542 IPR000595 -
Apr9g1292 849 Pfam Cyclic nucleotide-binding domain 444 528 IPR000595 -
Apr9g1292 849 Pfam KHA, dimerisation domain of potassium ion channel 775 844 IPR021789 -
Apr9g1292 849 Gene3D - 557 665 IPR036770 -
Apr9g1292 849 ProSiteProfiles Ankyrin repeat region circular profile. 633 664 - -
Apr9g1292 849 PANTHER POTASSIUM CHANNEL AKT1 37 848 IPR045319 GO:0005249|GO:0006813
Apr9g1292 849 Pfam Ankyrin repeats (3 copies) 575 663 IPR002110 GO:0005515
Apr9g1292 849 Pfam Ankyrin repeats (3 copies) 669 751 IPR002110 GO:0005515
Apr9g1292 849 SUPERFAMILY Ankyrin repeat 573 752 IPR036770 -
Apr9g1292 849 PRINTS EAG/ELK/ERG potassium channel family signature 139 149 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g1292 849 PRINTS EAG/ELK/ERG potassium channel family signature 248 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g1292 849 PRINTS EAG/ELK/ERG potassium channel family signature 296 313 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g1292 849 PRINTS EAG/ELK/ERG potassium channel family signature 340 349 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g1292 849 PANTHER POTASSIUM CHANNEL SKOR-LIKE 37 848 - -
Apr9g1292 849 Gene3D - 106 350 - -
Apr9g1292 849 ProSiteProfiles Ankyrin repeat region circular profile. 600 632 - -
Apr9g1292 849 SMART ANK_2a 600 629 IPR002110 GO:0005515
Apr9g1292 849 SMART ANK_2a 730 760 IPR002110 GO:0005515
Apr9g1292 849 SMART ANK_2a 664 693 IPR002110 GO:0005515
Apr9g1292 849 SMART ANK_2a 697 726 IPR002110 GO:0005515
Apr9g1292 849 SMART ANK_2a 633 662 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1292 Apr-Chr9 22569823 22580534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1292 672 750 Ion Channels AT5G37500 34.653 1.44e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1292 K21867 - gmx:100814385 1528.46