Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1291 ATGTCTTTTTCTCTGATCGAGGCCTGTAAGAAGAGAAAACGATGGCCAAAGATCTTCAGGTTGCACTCTTTCGGTGACCCTGGTTGCCCCATTTCACCTACGGGTTCCTTCCGCGACAACGTTCGATTTTTCCTTCAAGAAGCTGGAGAACTCGAAGATTACGATGTGTTGGGTAATCCTCTTTGGTGTACCCTTCTCATCCATGACAAGACCAACCTAATGGCTCCTCTTTACACCCTCGAAGAACACGTTTACCACTCTTCTCACCCATTCTGTGATCACTGCCGCTGTGTAGGTTGGAGTGGCCATTTTGTATCAAAAAGAAGGTACCATTTCATAATACCAATGGACAATGGGTGGCATAAACCCTTAGGTGAAGGTGTTCTTGATAATCAGAGTCATCTCTTGCATGGAGTGATTCATTGTAATGGGTATGGCCATTTGCTTTGTATTAATGGTACTGAAGGGGGTTCCAAAGTTTTAAGTGGGAGAGAGATCATGGATCTCTGGGACAGGATTTGCACCAATCTCCGAGCAAGGAAAATAGCAGTGGAAGATGTTTCAAGGAAGAGGTCTATGGATCTTCGCTTACTGCATGGAGTAGCTTATGGACACTCTTGGTTTGGTAGGTGGGGATATAGATTTTGTCGTGGAAGCTTTGGTGTGACAGACCAAAACTATTATGAAGCAATTGAAACTCTTGGTTCGTTAGAGCTTGATGTGATAGTAAAAGATTTGAGCAAGACAAAGTACCATAAAGAAATCAAACAAATGATTCGCTGCTACAGAGATATGAGTGAAACTCAAATCATCTCAATCAGGGATCTTCTCAGGTTTATGCTTACTGTCAAGTCTTCTCGTGCTCCTGTGTCTAAGATAACAATCACTTCTTCTGCTTCTGCTTCTCCTTCTACAGCATTCATCTCAAGAAATTCAACCAAACAAACACTTCCAAGCAGATCAAATCCTTTGAAGGAGAAATCTGCGAGGTATAAGAAGTTCAGCACTGCTGTGGCCAACATGGATAGCAGGTGGCCCACAAGGAGATTAGAGTTTGCAGCTCAAGTGATTGTGGATGCACTGAAAGAGAACAAGGCTGTGAAATCAGGCTCAGGTGGAATGACAAGACAAGATGTGAGAGATGCAGCTAGGCTCCACATTGGTGACACAGGCTTACTTGACTACGTACTTAAATCACTGAACAATGTGATTGTTGGGAATTATGTTGTTCGCCGCATGGTAAATCCATCAACTAGAATCCTAGAATACACTATTCATGAGCTTGGTAAGGGGTTCAAGGCCGCTGAACAGGAGCATGAGGTAATGGCTCATGTAGATCAACAAGTAGAGTCATCTTGGGTGCCTTGTAGTGATGTTTACAGTGATGTATTGTATTTGTACAAGAATGTGCTTTTGGGTTACCCAGATTCAGAAACAGTGGACTTGGCAGTTCAGACAATCCTAGACAGTAGGCACTTTGTGAAGGAGTGGCCATTAACTGATGAAATGGAGCAAGTATTGACATTTATTTGCCGTTTGAAACCAAATCTTGTGGACATCAAATCTGAATTGAAAGGTCTACCATGTGGTGAGGTTGTAGTGGTTCCATTGCATGCAACAGTTGGGGACTTGAAGAAAGCTGCTGAGGCTGCTTTGAGGGACACTTATTGTATTGCAGAAAGGCTCATAGTGACAGACATTTCAGAACTGATGGTTGCGGATGATGAGGAAGTGCTTTTTGGACTAATCCAATCTGGTGTGGAACTTTGTGTGAGGGGCATTGCTATAGATTTATGTACCCCATTGAAGTATCAGGGTGGTGCTGACAACTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAGGTGTGGCAGCATACACGCTGCAGTGGCATAGATGATTCTGAGACTGTGCCACCACTGTTTGTGTGCACTGGATGCTGTGATTCACTTGTACCCTCAAGGGTAGAAACCAGCGTTGGTATGGATTGTAGTGATTCTTTTCTGATTGCAGCAGAACCTACCCACTTACTAGAGTATGGGTATGGTTACTAA 2091 0.4362 MSFSLIEACKKRKRWPKIFRLHSFGDPGCPISPTGSFRDNVRFFLQEAGELEDYDVLGNPLWCTLLIHDKTNLMAPLYTLEEHVYHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNGWHKPLGEGVLDNQSHLLHGVIHCNGYGHLLCINGTEGGSKVLSGREIMDLWDRICTNLRARKIAVEDVSRKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTDQNYYEAIETLGSLELDVIVKDLSKTKYHKEIKQMIRCYRDMSETQIISIRDLLRFMLTVKSSRAPVSKITITSSASASPSTAFISRNSTKQTLPSRSNPLKEKSARYKKFSTAVANMDSRWPTRRLEFAAQVIVDALKENKAVKSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHELGKGFKAAEQEHEVMAHVDQQVESSWVPCSDVYSDVLYLYKNVLLGYPDSETVDLAVQTILDSRHFVKEWPLTDEMEQVLTFICRLKPNLVDIKSELKGLPCGEVVVVPLHATVGDLKKAAEAALRDTYCIAERLIVTDISELMVADDEEVLFGLIQSGVELCVRGIAIDLCTPLKYQGGADNWKVRCECGAQDDDGERMVACDICEVWQHTRCSGIDDSETVPPLFVCTGCCDSLVPSRVETSVGMDCSDSFLIAAEPTHLLEYGYGY* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1291 696 MobiDBLite consensus disorder prediction 306 326 - -
Apr9g1291 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 664 IPR013083 -
Apr9g1291 696 SUPERFAMILY FYVE/PHD zinc finger 607 665 IPR011011 -
Apr9g1291 696 SMART PHD_3 614 660 IPR001965 -
Apr9g1291 696 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 667 - -
Apr9g1291 696 MobiDBLite consensus disorder prediction 306 323 - -
Apr9g1291 696 ProSitePatterns Zinc finger PHD-type signature. 615 659 IPR019786 -
Apr9g1291 696 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 667 - -
Apr9g1291 696 CDD PHD_MMD1_like 615 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1291 Apr-Chr9 22563084 22565634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1291 10 665 PHD Transcription Factor Family AT5G22260 32.955 5.87e-122 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr9g1291 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1291 - - gmx:100813850 1153.27