Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1289 ATGGTTTTGTCTTGGACAAGGGGGAGAGTTTTCCGTCGGGCCCGTAAAGGGAAAGAGTTGAATTCCGGTGGTGATTTGGAGATAGAAATTGCTATCCCCACCCACTTCCGATGCCCGGTTACTCTTGATTTGATGAAAGATCCTGTGACACTGTCCACGGGAATAACCTACGACCGAGAAAGCATTGAGAAGTGGATTGAAGCAGGGAACCACACGTGCCCGGTTACCAAGAGAGAGTTGACCAGCTTTGACATGATCCCAAACCATGCCATTCGGAGGATGATTCAGGATTGGTGTGTTGAAAACCGTTCTTATGGGATTGAAAGGATCCCCACTCCTCGTATACCCGTCACTCCGTACGAGGTTACCGACACGTGTACGAGGATCCTGTCGGGTGCGGAAAACGGTGATGAAAACAAGTGTGTGGAATTGGTGAGGAAGATTAAGGCTTGGGGGAAAGAGAGTGAGAGGAATAAGAGGTGTATTGTGGGCAATGGTGCTGCTCTTGCGCTGGCTAAGGCTTTTGATTTTTTCTCACGTGGGTCGGTTGATAAGCACGTGGGTGTTTTGGAGGAGATTTTGGGGGTGTTGACATGGATGCGTCCTCTTGCCGAAGAGGGTAGATCCGTGTTGGGGTCAGTGAATTCTGTTAGTTGCATGGTTTGGTTTTTGAATGGTGAACAAGTTTATACCAGGCAAAGTGCTGCTTTGTTGCTTAAGGAAGTGCATGTTGAAGCGTTGGTGAAAAGTGTTGGTGTTGTTGAGGCTTTGGTTAAGATGATTAGGGAGCATGTTGGGAGTGTTGCCACAAAGGCATGTTTGTCAACGGTTTTTAACATGGTTTCCTCGTTAGAGAATAGAGATGGAGTTTCTCAAAGGTTTGTGGAATTGGGTTTGGTTTCACTCTTGTTGGAGGTTCTTGTTGATGCGGAAAGGGGGGTTTGTGAGAAAGCTTTGGGGGTGTTGGATTGCATTTGTGATTGCAAACAAGGGGTGGAAGTTGCGAAGGCAAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTGTTGAGGGTGTCTGAGTTGAGTTCTAGTTTTGCTGTGTCGATTCTTTGGAAGGTTTGTGACAAGACGGAGGAAGGAGTGTTGATTGAGGCACTTCAGGTTGGGGTGTTTCAGAAGCTCCTTGTTTTGTTGCAAGTGGGTTGTGGTGAGGGCACGAAGGAGAAGGCCACTGAATTGTTGAGATTGTTGAATGGTTATAGGAGCAAGGCAGAATGTGTTGATTCATCGTTGGATTTCAAGCACTTGAAAAACCCTTCTAATTGA 1308 0.4664 MVLSWTRGRVFRRARKGKELNSGGDLEIEIAIPTHFRCPVTLDLMKDPVTLSTGITYDRESIEKWIEAGNHTCPVTKRELTSFDMIPNHAIRRMIQDWCVENRSYGIERIPTPRIPVTPYEVTDTCTRILSGAENGDENKCVELVRKIKAWGKESERNKRCIVGNGAALALAKAFDFFSRGSVDKHVGVLEEILGVLTWMRPLAEEGRSVLGSVNSVSCMVWFLNGEQVYTRQSAALLLKEVHVEALVKSVGVVEALVKMIREHVGSVATKACLSTVFNMVSSLENRDGVSQRFVELGLVSLLLEVLVDAERGVCEKALGVLDCICDCKQGVEVAKANALTLPLVIKKLLRVSELSSSFAVSILWKVCDKTEEGVLIEALQVGVFQKLLVLLQVGCGEGTKEKATELLRLLNGYRSKAECVDSSLDFKHLKNPSN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1289 435 PANTHER WDSAM1 PROTEIN 7 433 IPR045185 GO:0061630
Apr9g1289 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Apr9g1289 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Apr9g1289 435 Gene3D - 126 422 IPR011989 -
Apr9g1289 435 CDD RING-Ubox_PUB 36 77 IPR045210 -
Apr9g1289 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Apr9g1289 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Apr9g1289 435 SUPERFAMILY ARM repeat 127 411 IPR016024 -
Apr9g1289 435 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 433 - -
Apr9g1289 435 SUPERFAMILY RING/U-box 28 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1289 Apr-Chr9 22542606 22544433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1289 27 433 U-box Gene Family AT5G37490 47.229 6.03e-122 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1289 - - gmx:100795913 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1983 10 32735888 32737454 Apr9g1289 9 22542606 22544433 PCT