Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1288 ATGACAATACAATGCAGCCTCCCAATCTTTCCTCATCAACAATGGTCATTACAACCCGGGCTTTCAGATACCTGGGCCCCACATCCATGTGCATACCCAAAGAAGAAGATGAAGAATAGCTACACTGACACTAACACTAACACCAACACCCACCACGTAAAGCCTCAAGCTTTGGCCATTTTCCTTTATGGGTTCTTCTCTATGACCCTCTTCGCCACTTCACAAGACGACGCTGCTGTAATGCAAGCTCTCAAAAACAGCCTCAACCCACCCGACTCACTCGGGTGGTCCGACCCGGATTGTTGTAGATGGAATCACGTGACTTGCTCTGATGACAAACGGGTCACGCGGATCCAAATCGGGCGGCAGAACCTGCAAGGCACGCTTCCTCCAACGCTTCAGAACTTGACCCAGTTACAACACTTGGAGCTCCAGTACAACAACATTTCGGGTCCTCTTCCTTCTCTAAACGGGCTAACGAATCTTCAAGTTTTCATGGCCAGTAACAACCGTTTCTCCGCCGTCCCCGGCGACTTCTTCGCCGGCATGTCGCAACTTCAAGCGGTGGAGATCGACGACAACCCTTTTGAGCCTTGGGAGATTCCTCAGAGTCTTAAAAGCGCTTCTGCACTTCAGAACTTTTCAGCTAACTCGGCTAATATCAGAGGAAAGGTTCCAGATTTTTTTGGTTCTGATGTGTTCCCTGGCTTGACCCTTTTGCATTTGGCCTTCAATGACCTTGAGGGAGGGTTACCCTTGAGTTTGTCTGGGTCTCAGATTGAGTCTCTGTGGTTGAATGGACAGAAGAGTGAGAACAAGCTTGGTGGAACCGTTGAGGTTTTGCAGAACATGACTTTCTTGACGCAGGTTTGGTTGCATTCCAATGCTTTCACTGGTCCTTTGCTTGATTTTTCTGGGTTGAAGAGTTTAGAGGATTTGAGTTTGAGGGATAACAGGTTTACTGGTCCTGTTCCGGATTCTTTGGTTGGTCTTAAGTCGCTTAAAGTTGTGAACTTGACAAATAACTTGTTTCAGGGTCCAATGCCTGTGTTTGGTGATGGGGTTAAGGTGGATAATGATAAGGATTCCAATAGTTTTTGCTTGCCGGGTCCTGGTGATTGTGATCCTAGGGTGGATGTTCTTCTTTCTGTTGTGAAGGATATGGGTTATCCTCAGAGGTTTGGTGAGAGTTGGAAAGGGAATGATCCTTGTGTTAATTGGATTGGGATTACTTGTAGTGATGGGAACATTACTGTTGTTAATTTTCAGAAGATGGGTCTTACTGGTGTGATATCCCCAGAATTTGCTAAGCTTAAGTCATTGCAAAGATTAGTGCTTGCTGATAACAATCTCACTGGTTTGATTCCGGAGGAGCTTACTACTTTGCCTGTGCTAGCTCAATTGAATGTTGCAAACAACCAGCTTTATGGAAAGGTGCCAAAATTTAGGAGCAGTGTGGTTTTGACCACGAGGGGTAACGTTGATATAGGGAAGGATAAAAGCAGCCATTCCCCTCAGGATCCGGTTTCTCCCGGAGGTCCCAATGTGAATGGAGAAAGTGGAGGGAGTTCTGGAAATGGTGGCAAAAAGTCTTCTTCCCATGTGGGAGTAATTGTCTTTTCTGTGGTTGGGGCTGTGTTTGTGGTTTCGTTGATTGGTTTCTTAGTTTTCTGCTTGTTTAGGATGAAGCAAAAACGATTAACCAGGGTCCAGAGCCCAAATGCATTAGTTATTCATCCCAGGCATTCTGGATCAGATAATGAAAGTGTGAAGATAACGGTTGCAGGTTCAAGTGTCAGTGTTGGGGGTGCTAGTGAAACCCGAACTGTAACTGGCAGTGAGGCCGGAGATATTCAGATGGTTGAAGCAGGAAACATGGTCATTTCTATACAAGTCTTGAAGAATGTCACTGACAATTTCAGTGAGAAAAATATATTGGGGCAAGGAGGTTTTGGAACAGTTTATAAAGGTGAACTCCATGATGGTACAAGAATTGCTGTGAAGAGAATGGAGTCTGGGGCAATAACTGGGAAGGGTGCAGCAGAATTCAAGTCTGAAATTGCTGTTTTGACGAAGGTTCGCCACCGGCATCTTGTTGCACTTCTTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTACGAGTACATGCCTCAGGGAACGCTAAGTAAGCATCTGTTCAACTGGCCAGAGGAAGGGTTGGAACCACTGGAATGGAATAGAAGATTGACCATTGCCTTAGATGTGGCAAGGGGTGTTGAGTACCTCCATGGCTTGGCCCATCAAAGCTTCATACACAGGGATTTAAAACCTTCAAATATTCTCCTTGGAGATGATATGAGGGCAAAAGTTGCAGATTTTGGTCTAGTGCGTCTTGCTCCAGAGGGAAAAGCCTCTATAGAAACAAGAATTGCAGGAACTTTCGGCTATTTGGCACCGGAGTATGCAGTTACCGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGCGTAATATTGATGGAGCTGATGACTGGAAGAAGAGCGCTTGATGAAACCCAACCTGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGAATGTCCATAAATAAGGACTCATTCCGCAAAGCCATTGACCCGACAATTGAGCTCAACGAGGAAACTCTTGCGAGTATTCACACTGTAGCAGAGTTAGCTGGCCACTGCTGTGCAAGGGAGCCATACCAAAGGCCTGACATGGGTCATGCTGTTAATGTGCTTTCATCTCTTGTAGAACTTTGGAAACCATCTGATCAGAGTTCTGAAGATATATATGGTATTGACCTGGACATGTCCTTGCCGCAAGCTCTTAAGAAGTGGCAAGCTTACGAAGGTAGAAGCCAAATGGAGTCTTCTTCTTCTTCTTCTCTTCTTCCAAGCTTGGATAACACACAAACAAGTATACCTACACGCCCATATGGATTTGCTGAGTCTTTCACATCAGCAGATGGTAGGTGA 2985 0.4566 MTIQCSLPIFPHQQWSLQPGLSDTWAPHPCAYPKKKMKNSYTDTNTNTNTHHVKPQALAIFLYGFFSMTLFATSQDDAAVMQALKNSLNPPDSLGWSDPDCCRWNHVTCSDDKRVTRIQIGRQNLQGTLPPTLQNLTQLQHLELQYNNISGPLPSLNGLTNLQVFMASNNRFSAVPGDFFAGMSQLQAVEIDDNPFEPWEIPQSLKSASALQNFSANSANIRGKVPDFFGSDVFPGLTLLHLAFNDLEGGLPLSLSGSQIESLWLNGQKSENKLGGTVEVLQNMTFLTQVWLHSNAFTGPLLDFSGLKSLEDLSLRDNRFTGPVPDSLVGLKSLKVVNLTNNLFQGPMPVFGDGVKVDNDKDSNSFCLPGPGDCDPRVDVLLSVVKDMGYPQRFGESWKGNDPCVNWIGITCSDGNITVVNFQKMGLTGVISPEFAKLKSLQRLVLADNNLTGLIPEELTTLPVLAQLNVANNQLYGKVPKFRSSVVLTTRGNVDIGKDKSSHSPQDPVSPGGPNVNGESGGSSGNGGKKSSSHVGVIVFSVVGAVFVVSLIGFLVFCLFRMKQKRLTRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGASETRTVTGSEAGDIQMVEAGNMVISIQVLKNVTDNFSEKNILGQGGFGTVYKGELHDGTRIAVKRMESGAITGKGAAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSKHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELMTGRRALDETQPEDSMHLVTWFRRMSINKDSFRKAIDPTIELNEETLASIHTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPSDQSSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSSLLPSLDNTQTSIPTRPYGFAESFTSADGR* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1288 994 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Apr9g1288 994 PANTHER OSJNBA0070M12.3 PROTEIN 66 994 - -
Apr9g1288 994 ProSiteProfiles Leucine-rich repeat profile. 138 160 IPR001611 GO:0005515
Apr9g1288 994 SUPERFAMILY L domain-like 87 488 - -
Apr9g1288 994 MobiDBLite consensus disorder prediction 958 994 - -
Apr9g1288 994 MobiDBLite consensus disorder prediction 494 528 - -
Apr9g1288 994 SMART LRR_typ_2 307 330 IPR003591 -
Apr9g1288 994 SMART LRR_typ_2 136 158 IPR003591 -
Apr9g1288 994 SMART LRR_typ_2 159 182 IPR003591 -
Apr9g1288 994 SMART LRR_typ_2 438 461 IPR003591 -
Apr9g1288 994 MobiDBLite consensus disorder prediction 503 528 - -
Apr9g1288 994 MobiDBLite consensus disorder prediction 958 983 - -
Apr9g1288 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Apr9g1288 994 Gene3D Phosphorylase Kinase; domain 1 600 717 - -
Apr9g1288 994 SMART serkin_6 640 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1288 994 Gene3D Ribonuclease Inhibitor 376 500 IPR032675 -
Apr9g1288 994 Pfam Leucine rich repeat N-terminal domain 378 413 IPR013210 -
Apr9g1288 994 Pfam Leucine rich repeat N-terminal domain 75 110 IPR013210 -
Apr9g1288 994 Gene3D Ribonuclease Inhibitor 74 374 IPR032675 -
Apr9g1288 994 Pfam Leucine rich repeat 431 475 IPR001611 GO:0005515
Apr9g1288 994 CDD STKc_IRAK 646 919 - -
Apr9g1288 994 Gene3D Transferase(Phosphotransferase) domain 1 718 937 - -
Apr9g1288 994 Pfam Protein kinase domain 641 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1288 994 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1288 994 PANTHER RECEPTOR PROTEIN KINASE TMK1 66 994 - -
Apr9g1288 994 SUPERFAMILY Protein kinase-like (PK-like) 618 924 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1288 Apr-Chr9 22533480 22537736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1288 118 922 Receptor kinase-like Gene Family AT5G07280 30.861 2.69e-81 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Apr9g1288 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1288 - K00924 aprc:113846741 1886.69