Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1279 ATGTCGCTATTTTCATTCACCTTTATCTTCTTCTTCGCCTTCTTATTCTGTAACCTTTGTTTTCTCAACGCCGTTACTGAGTTCGACTTTGGAACCTTAACTTTGAGCAGCCTAAAGCTTCTCGGCGACGCTCACTTGAACAACGGCACCGTGAGCCTCACGCGCGACCTCGCCGTTCCCACTTCCGGCGCCGGCAGGGCTCTTTACTCTCGCCCCGTCAGATTCCGGCAACCCGGAAACCGCTTTCCGGCGAGCTTCAGCACCTTCTTTTCCTTCTCCGTCGCCAATCTCAACCCTTCCTCCATCGGCGGAGGCCTCGCCTTCGTCCTCTCGCCAGACGACGACGCCCTCGGCGACGGCGGGGGGTTGCTCGGCCTCGGAGGCGTCGACGGCGGCGGATTCATCGCCGTGGAGTTCGACACTTTGATGGACGTGGAGTTTAAGGACATTAATGGGAACCATGTTGGTGTGGACTTAAACAGCGTCGTTTCGAGTGAGGTTGGGGATTTGGGTAACTTTGGGATCGATCTGAAGAGTGGTGATTTGGTTAACGCATGGATCGAGTTCGATGGATCCAGCAAAGGGTTGAACGTGTGGGTTTCTTATTCTAATCTGAAACCGAAAGATCCAATTTTGTCGATGAATGTTGATGTGGATCAGTATCTGAATGATTTTATGTATGTGGGGTTCTCTGGTTCAACGCAGGGTAGCACAGAGATTCATAGAATAGAGTGGTGGAGTTTTAGTTCTTCTTTTGAGTCTGGTTCTTCGCCGGCGGCGCCGCCGCCACCTGCGGTGAGCTTGATGAACCCAACGGCGAATTCGGTGAAATCTGTGCCTCCATCTTTGGCTCCTTCTTCTGCTTCTGCTACTTCGAATGGTGAAGAAAAAGAGAGTAAATCGTCTTGTCATAATGGGTTGTGTAAGCAAAATTTGGGAGCAGTTGCTGGGGTTGTAACTGCTGGGGCTTTTGTTTTGGCTCTTTTTGCTGGTGTATTGATTTGGTTTTACTCTAAGAAGGTTAAGCGTGTGAATAAATTTGATTCACTTGGATCAGAAATCATCAAAATGCCGAAGCAGTTTAGCTACAAGGAGTTGAAGTGTGCTACCAAGTGTTTCAATGCAAATAGGATCATTGGTCATGGTGCTTTTGGGACTGTGTATAAGGGAATTTTGCCTGAGAATGGGGACATTGTGGCGGTGAAGAGGTGTAGTCATAGTAGTCAGGGAAAGAATGAGTTTTTGTCTGAGTTGTCTATAATTGGGAGCCTGAGGCATAGGAATCTTGTTCGGCTTCAAGGGTGGTGTCATGAGAATGGTGAAATTTTGTTGGTGTATGACTTGATGCCTAATGGGAGTTTGGATAAGGCTTTGTTTGAGGCTAGAACGCCTCTTCCGTGGGATCACAGACGCAAGATTTTGTTAGGTGTGGCATCTGCATTGGCCTACTTGCATCAAGAGTGTGAGAATCAGGTGATACATAGAGACATTAAGACTAGTAACATAATGTTGGATGAACGGTTCAATGCCCGGTTGGGTGATTTTGGTTTGGCAAGGCAAACTGAGCATGACAAGTCGCCGGATGCCACGGTGGCTGCCGGAACGATGGGGTACCTTGCACCTGAGTATCTCCTTACGGGTAAAGCTACAGAGAAAACTGATGTATTCAGTTATGGTGCTGTGGTTCTTGAGGTGGCTAGTGGTAGAAGACCAATAGAGAAAGATGCCACTGGGGGTGGTAAAGCTGGGATTAGCAGCAATTTGGTGGAATGGGTTTGGAGTTTGCACCGGGAAGGGAGATTGCTAATGGCTGCTGATCCAAGGCTTGAGGGTGTGTTTGATGAGGAGGAGATGAGGAGGTTGCTCTTGGTTGGGCTAGCTTGCTCTCACCCTGATCCATTGGCTAGACCTACTATGAGGTGTGTGGTTCAGATGCTTGTAGGTGAGGCTGAAGTGCCTATTGTCCCTAGAACCAAGCCAACTACGGGTTTTAGTACTTCACACTCTCACCTCTTATTGAGCTTGCAAGATAGTGTATCTGACTGTGATGGTATAATCACCATCTCTACATCCTCATCAGAGGACAGCTTCAATCTTGGAGATATACTCTGA 2112 0.4825 MSLFSFTFIFFFAFLFCNLCFLNAVTEFDFGTLTLSSLKLLGDAHLNNGTVSLTRDLAVPTSGAGRALYSRPVRFRQPGNRFPASFSTFFSFSVANLNPSSIGGGLAFVLSPDDDALGDGGGLLGLGGVDGGGFIAVEFDTLMDVEFKDINGNHVGVDLNSVVSSEVGDLGNFGIDLKSGDLVNAWIEFDGSSKGLNVWVSYSNLKPKDPILSMNVDVDQYLNDFMYVGFSGSTQGSTEIHRIEWWSFSSSFESGSSPAAPPPPAVSLMNPTANSVKSVPPSLAPSSASATSNGEEKESKSSCHNGLCKQNLGAVAGVVTAGAFVLALFAGVLIWFYSKKVKRVNKFDSLGSEIIKMPKQFSYKELKCATKCFNANRIIGHGAFGTVYKGILPENGDIVAVKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHENGEILLVYDLMPNGSLDKALFEARTPLPWDHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDERFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIEKDATGGGKAGISSNLVEWVWSLHREGRLLMAADPRLEGVFDEEEMRRLLLVGLACSHPDPLARPTMRCVVQMLVGEAEVPIVPRTKPTTGFSTSHSHLLLSLQDSVSDCDGIITISTSSSEDSFNLGDIL* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1279 703 Pfam Protein kinase domain 374 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1279 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Apr9g1279 703 Gene3D Transferase(Phosphotransferase) domain 1 449 652 - -
Apr9g1279 703 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 259 IPR013320 -
Apr9g1279 703 PANTHER - 24 695 - -
Apr9g1279 703 ProSiteProfiles Protein kinase domain profile. 373 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1279 703 CDD lectin_legume_LecRK_Arcelin_ConA 42 243 IPR001220 GO:0030246
Apr9g1279 703 MobiDBLite consensus disorder prediction 269 296 - -
Apr9g1279 703 Gene3D Phosphorylase Kinase; domain 1 337 448 - -
Apr9g1279 703 SMART serkin_6 373 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1279 703 MobiDBLite consensus disorder prediction 259 300 - -
Apr9g1279 703 Pfam Legume lectin domain 27 254 IPR001220 GO:0030246
Apr9g1279 703 SUPERFAMILY Protein kinase-like (PK-like) 355 670 IPR011009 -
Apr9g1279 703 ProSitePatterns Protein kinases ATP-binding region signature. 379 402 IPR017441 GO:0005524
Apr9g1279 703 CDD STKc_IRAK 379 646 - -
Apr9g1279 703 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 24 695 - -
Apr9g1279 703 Gene3D - 24 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1279 Apr-Chr9 22430685 22433330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1279 1 685 Receptor kinase-like Gene Family AT3G53380 70.833 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr9g1279 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1279 - - gmx:100793157 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1972 10 32634600 32636948 Apr9g1279 9 22430685 22433330 PCT