Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1278 ATGGTTCTCTCCAAAACCGCTTCCGAGACAGATGTCTCTGTCCATTCAACCTTCGCTTCTCGCTATGTCCGCACCTCCCTTCCCAGGTTCAAAATCCCGGAGCAATCGATCCCGAAGGAAGCAGCGTATCAGATCATAAACGACGAGTTAATGCTGGATGGGAATCCCAGGCTGAACCTGGCGTCGTTCGTCACGACGTGGATGGAACCTGAATGTGACAAACTCATAATGGCTGCCATTAACAAGAACTACGTAGACATGGACGAGTACCCTGTCACCACTGAGCTCCAGAACCGGTGTGTTAACATGATAGCTCACCTTTTCAATGCACCACTTGAAGAGTCAGAACCTGCAGTTGGTGTTGGTACGGTAGGCTCATCAGAGGCCATTATGTTGGCTGGGTTGGCATTCAAAAGGAGATGGCAGAACAAAAGGAAACAAGAAGGAAAGCCTTATGACACTCCCAACATTGTCACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTCGCAAGGTATTTTGAGGTGGAGTTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTGATGGACCCTGAGAAGGCCGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACACTTAACGGAGAGTTCGAAGATGTCAAGGTCTTAAATGATCTCTTAGTTGAAAAGAATAAGCAAACTGGATGGGACACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCATTTCTTTATCCAGAGCTTGAGTGGGACTTCCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTAGTCTATGCTGGCATTGGTTGGGTCATCTGGAGAAGCAAGGAAGATCTTCCTGAGGAACTTATCTTCCACATTAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAGTACTACCAATTAATTCGTCTGGGTCATGAGGGATATAAAATGGTGATGGAAAACTGCAGAGACAACATGGTAGTACTTAAGGAGGGACTCGAGAACACGGGTCGCTTTGAGATTGTATCCAAAGACGTTGGAGTCCCATTGGTGGCCTTCACTTTGAAGGACCATAACCACTTTGATGAATTCCAAATCTCTGATATGCTGAGACGCTATGGTTGGATAGTGCCAGCATACACAATGCCCCCAGATGCACAACATGTCACTGTTCTTCGTGTTGTCATTAGAGAGGACTTTTCTCGTACCCTTGCGGAGCGTTTAGTCAACGATGTCTCCAAAGTGTTGCATGAACTTGATTTGCTTCCTGCTAAGGTCATCAGTAACAGCACCATGACAGTTACTGGAGAAGGTGCTGATGATGTGGCCAAAGTGATTGTTGCTAAGAAGAGTGAAATAGAGACCCAAAGGGAAATCACTTCAGCTTGGAAGAAATTTGTCATGCAGAGGAAGAAAATGAATGGAGTGTGTTAG 1509 0.4612 MVLSKTASETDVSVHSTFASRYVRTSLPRFKIPEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESEPAVGVGTVGSSEAIMLAGLAFKRRWQNKRKQEGKPYDTPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKVLNDLLVEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYKMVMENCRDNMVVLKEGLENTGRFEIVSKDVGVPLVAFTLKDHNHFDEFQISDMLRRYGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVNDVSKVLHELDLLPAKVISNSTMTVTGEGADDVAKVIVAKKSEIETQREITSAWKKFVMQRKKMNGVC* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1278 502 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Apr9g1278 502 Gene3D - 361 448 - -
Apr9g1278 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 IPR010107 GO:0004351|GO:0006536|GO:0030170
Apr9g1278 502 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Apr9g1278 502 CDD DOPA_deC_like 59 439 - -
Apr9g1278 502 Gene3D - 1 65 - -
Apr9g1278 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Apr9g1278 502 Gene3D - 66 360 IPR015421 GO:0003824
Apr9g1278 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1278 Apr-Chr9 22422487 22429097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1278 1 502 Calmodulin-binding Proteins AT5G17330 83.865 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1278 K01580 - gmx:100791696 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1971 10 32624988 32632397 Apr9g1278 9 22422487 22429097 PCT