Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1273 ATGCCTATTCAAGGTCAAAATGCAGTTACTAGACCACGGGGTGGTCTTCCAGTTGGAAATGGAGTATCCTTGAATTCTGGAGTGCATTCTGTTGCACATATTCCACTAAATGATCAATTTTCTTGTGGAAACGACTATTCCCTGAAGGTTAGGAAACCATATACTATCACAAAACAACGAGAGAGGTGGACAGATGAAGAACATAAGAAATTTCTTGAAGCTTTAAAGCTATATGGCAGGGCCTGGAGACGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTCTTAGAGAGCCTAGTGGGAACAATACTACAACCTTGGAGGAATCAATTGAAATTCCTCCTCCACGACCAAAACGGAAGCCAATTCATCCTTACCCACGTAAACTTGTAGAGATCCTAAAGAAAGAAATTTCCAAATCAGAACAGTTACTGAGGTCTAATTCTCTGAAATCATCAGATTTTGGTCAAGAAAACAACTCTCCCAAGTCAGTGTTGTCCACCGTTGTTTCAGACACACTTGGTTCCTCCAATTCAGACACACCAACTAGAAGTTTGTCTCCAGTCTCATCCATTAGCGGTGTCCACCCAAGCAACTTTCCACTTGCTGAAACCAAGACATTATTTGAGGAAGATGGGTCTCCAACACAAGATGGACTAAATGCTAGTTTTGCTCATGATGATCAACCTCTTGTGAAACTGGAGCTTTTTCACAAAGAAAGTGTTTCTACCAAACATGATACAACAGAAGAATCATGTGGCCGAACTCTCAAACTGTTTGGGACAACTCTATTAGTAACAGAAACCTGCAAACCTACAATGGAGGCATGCAAACCAATACCTGCTGTGTGTCTTATGCAACTTCAGATTGGATGTTCAGATATTGCAGAAGGTCATGCAACTATTGTTCCTTGGTGGACTCTTTCCCACAATAAACCATTCATGAAAGACTCTGAGGCAAAACAACATCTATATTCTAATATTGGAGAGTTTGAAAATGAAGAAGTTCTAAAGGAAGGATCTTGGACTGGCTCAAACACTAGTTCAATTAATGATGGGGATAACAATGAAAATTCAGATGATCAAGCCAAAAGTCTAGTGCATTGCTTTAGCAAAGGGGAAGAAAAGTTGGACCCTCTTGGACACACAAGACCAAGTGAAACATCGTCTATATTTGAGCAAAGGGTGAGAACTAAAACCTGTGGGAAAGGGTTTGTACCATATAAAAGGTGCATGGCAGAGAGAGAAATGCAATTCCCACCAACCAATTATGAGGAGAGGGAAGAACAACGTATCAGGCTTTCCTTATAG 1350 0.4052 MPIQGQNAVTRPRGGLPVGNGVSLNSGVHSVAHIPLNDQFSCGNDYSLKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKILREPSGNNTTTLEESIEIPPPRPKRKPIHPYPRKLVEILKKEISKSEQLLRSNSLKSSDFGQENNSPKSVLSTVVSDTLGSSNSDTPTRSLSPVSSISGVHPSNFPLAETKTLFEEDGSPTQDGLNASFAHDDQPLVKLELFHKESVSTKHDTTEESCGRTLKLFGTTLLVTETCKPTMEACKPIPAVCLMQLQIGCSDIAEGHATIVPWWTLSHNKPFMKDSEAKQHLYSNIGEFENEEVLKEGSWTGSNTSSINDGDNNENSDDQAKSLVHCFSKGEEKLDPLGHTRPSETSSIFEQRVRTKTCGKGFVPYKRCMAEREMQFPPTNYEEREEQRIRLSL* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1273 449 MobiDBLite consensus disorder prediction 185 211 - -
Apr9g1273 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Apr9g1273 449 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Apr9g1273 449 SMART sant 59 107 IPR001005 -
Apr9g1273 449 PANTHER PROTEIN REVEILLE 7-RELATED 30 437 - -
Apr9g1273 449 MobiDBLite consensus disorder prediction 352 369 - -
Apr9g1273 449 PANTHER SWI/SNF COMPLEX-RELATED 30 437 - -
Apr9g1273 449 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Apr9g1273 449 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Apr9g1273 449 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Apr9g1273 449 MobiDBLite consensus disorder prediction 112 139 - -
Apr9g1273 449 Gene3D - 62 108 - -
Apr9g1273 449 CDD SANT 62 105 IPR001005 -
Apr9g1273 449 MobiDBLite consensus disorder prediction 351 374 - -
Apr9g1273 449 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1273 Apr-Chr9 22373213 22377019 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr9g1273 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1273 - - gmx:778060 624.78