Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1272 ATGACACTCGCAGTTGTGTCTGCGTTCACACTATCCATTCTCTTCACACTCTCTTCAAAAGCCACCGCTCACTACTCTTCCTCTTCTTCCCAGCCACCGTCTCTACAATCTTCTTCTTCGCCCTCCTTCTCCGAATGGCGATCTGCGCACGCCACCTATTACGCCGCCGCCGATCCCCGTGACGCGGTGGGAGGCGCGTGCGGCTACGGCGACCTGCTGAAGGGCGGCTACGGGATGGCGACGGTGGGGCTGAGCGAGACGCTGTTCGAGCGCGGTCAGATCTGCGGCGCGTGCTTCGAGTTGAAGTGCGTGGAGGACATGCGGTGGTGCATCCCCGGCACCTCCATCATCGTGACGGCGACCAATTTCTGTGCCCCTAATTATGGGTTTACGAACGAAGGAGGTGGACACTGTAACCCTCCCAATAAACACTTCGTTCTTCCCATTGAAGCCTTTGAGAAAATCGCTATTTGGAAAGCTGGGAACATGCCCGTTCAGTATCGCAGGATAAAGTGCAGAAAGGAAGGAGGGATCCGATTTACAATCACTGGTTCTGGTATCTTCATTTCAGTGCTGATAAGCAATGTTGCTGGCCACGGAGACATAGTAGCGGTGAAGGTTAAAGGCTCAAGAACTGGTTGGCTTTCAATGGGTCGGAATTGGGGGCAAAACTGGCATGTAAATGCATTGTTACAGAATCAACCTCTTTCATTCGAGGTTACTGCTAGTGATGGCAAAACAGTTACATCTTACAGTGTTGCTCCCAAGGATTGGAGCTTTGGACAAACCTTTGAAGGCAAGCAGTTTGAGACTTAA 816 0.5208 MTLAVVSAFTLSILFTLSSKATAHYSSSSSQPPSLQSSSSPSFSEWRSAHATYYAAADPRDAVGGACGYGDLLKGGYGMATVGLSETLFERGQICGACFELKCVEDMRWCIPGTSIIVTATNFCAPNYGFTNEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRFTITGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLSMGRNWGQNWHVNALLQNQPLSFEVTASDGKTVTSYSVAPKDWSFGQTFEGKQFET* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1272 271 Pfam Lytic transglycolase 82 167 IPR009009 -
Apr9g1272 271 PANTHER EXPANSIN-A15 24 270 IPR002963 GO:0009664
Apr9g1272 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 266 IPR007117 -
Apr9g1272 271 SMART dpbb_1 81 167 IPR007112 -
Apr9g1272 271 Gene3D - 177 269 IPR036749 -
Apr9g1272 271 SUPERFAMILY Barwin-like endoglucanases 39 195 IPR036908 -
Apr9g1272 271 Gene3D - 29 173 IPR036908 -
Apr9g1272 271 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Apr9g1272 271 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Apr9g1272 271 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Apr9g1272 271 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Apr9g1272 271 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Apr9g1272 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Apr9g1272 271 SUPERFAMILY PHL pollen allergen 174 266 IPR036749 -
Apr9g1272 271 PRINTS Expansin signature 76 90 IPR002963 GO:0009664
Apr9g1272 271 PRINTS Expansin signature 103 114 IPR002963 GO:0009664
Apr9g1272 271 PRINTS Expansin signature 116 126 IPR002963 GO:0009664
Apr9g1272 271 PRINTS Expansin signature 135 152 IPR002963 GO:0009664
Apr9g1272 271 PRINTS Expansin signature 152 165 IPR002963 GO:0009664
Apr9g1272 271 PRINTS Expansin signature 176 188 IPR002963 GO:0009664
Apr9g1272 271 PRINTS Expansin signature 188 209 IPR002963 GO:0009664
Apr9g1272 271 PRINTS Expansin signature 223 244 IPR002963 GO:0009664
Apr9g1272 271 PRINTS Expansin signature 252 268 IPR002963 GO:0009664
Apr9g1272 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 177 IPR007112 -
Apr9g1272 271 PANTHER EXPANSIN-A13 24 270 - -
Apr9g1272 271 Pfam Expansin C-terminal domain 178 255 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1272 Apr-Chr9 22363867 22366184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1272 45 271 Expansin Gene Family AT3G03220 84.141 7.87e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1272 - - gmx:100784516 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1965 10 32563841 32565648 Apr9g1272 9 22363867 22366184 PCT