Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1257 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGGGAGAAGAAGTGTTTGAATTCTGAGCTGTGGCATGCATGTGCTGGGCCATTGGTGTCCCTACCAACAGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAACAGGTTGCTGCCACAACCAACAGAGAAGTTGATGGGCACATACCCAACTACCCCAGCTTGCCACCCCAATTGATTTGCCAACTTCATAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCCCAAATGACGCTACAACCATTGACTCCGCAAGAGCAGAAGGATACCTTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACATTAACGGCAAGTGACACTAGCACGCATGGAGGGTTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAGCAACCACCTGCGCAAGAACTAATTGCTAGGGATCTTCATGATGTTGAGTGGAAGTTTCGGCATATTTTTCGGGGACAGCCGAAACGGCACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCAAAAAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGGGCTAATCGGCCACAAACTGTTATGCCTTCATCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCGGCTGCTGCCCATGCTGCTGCAACTAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATCCCTCTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCTAGTGTCCGGAGGTACATGGGTACAATAACTGGTATAAGTGACCTTGATCCCGTTCGGTGGCCGAATTCTCATTGGCGGTCCGTTAAGGTTGGTTGGGATGAATCAACAGCAGGGGAGAGACAGCCACGTGTATCATTATGGGAGATTGAGCCTTTAACAACATTTCCAATGTATCCATCGTTGTTTCCTCTAAGATTGAAACGTCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTGATGTGGCTGAGAGGTGGACCTGGAGACCAAGCTCTCAGTTCCCTGAATTTTCAAGGTGCTGGTTTGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTGCTTGGAAATGATCATAATCAACAGTACCAAGCCATGTTGGCAGCTGGTATGCAAAACATTGGGAGTGTAGATCTAATGAGACAACAAATGATGAATTTTCAGCAGCCTTTCAATTATCTTCAACAATCAGGAAACACCAATCCTCCTTTGCAGCTTCAGCAGCAGCAAACAATTCAGCAATCCGTATCACCTAATATCCTGCAGCCACAGGCCCAAGTATTGGCAGAGAACCTGTCTCACCACATCCTTCAGAAATCACACAATAACCGAGAAGACCAAACACCACCGCCACAACAGCAGCACACTTATCAAGATACACTTTTAATTCAAAGTGATCAGCTCCATCAGAGGCAACAACACTCTAGTCTGCCCTCACCATCATATTCAAAACCAGACTTCTTAGATTCAAACATAAAGTTCTCTGCTTCAGTTTCACCAGGGCAAAACATGCTTAGTTCACTTTGTCCTGAAGGGAGTGGCAATCTCTTGAATTTGTCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCCCAACAATCATGGGCAGCCCCGAAGTTTACACCTTTGCAGGTCAATGCCTTTGGCAACTCAGTGCCACACGTGCAATATTCTGGAAAGGATACTGCAATGGTACCACCACATTGTAACTCAGACACCCAAAATCCTATTCTGTTTGGTGTCAACATTGATTCATCTGGCCTTCTGCTCCCTACTACCGTCCCTCGATATACTACCACATCAACTGACACTGATGCATCGACAATGGCACTAGGGGAGTCTGGTTTCCAGGCTCCTCTGTATCCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGTTGACCCCCAAAACCAGACACGGACATTTGTCAAGGTTTACAAATCAGGGTCAGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAGCTGCGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGCGATGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCCGTAGAATCCCTTGGTCCAAGTTCAGGACAAAGGCTGAATAGCACTGGTGCAGAATCTCATGAAATTGTTTCTGGATTACCATCAATAGGCTCACTTGAATACTGA 2541 0.4569 MKLSTSGLGQQGHEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQALSSLNFQGAGLLPWMQQRLDPTLLGNDHNQQYQAMLAAGMQNIGSVDLMRQQMMNFQQPFNYLQQSGNTNPPLQLQQQQTIQQSVSPNILQPQAQVLAENLSHHILQKSHNNREDQTPPPQQQHTYQDTLLIQSDQLHQRQQHSSLPSPSYSKPDFLDSNIKFSASVSPGQNMLSSLCPEGSGNLLNLSRSGQSMLTEQLPQQSWAAPKFTPLQVNAFGNSVPHVQYSGKDTAMVPPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTTSTDTDASTMALGESGFQAPLYPCMQDSSELLQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGAESHEIVSGLPSIGSLEY* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1257 846 ProSiteProfiles PB1 domain profile. 720 804 IPR000270 GO:0005515
Apr9g1257 846 Gene3D - 291 363 - -
Apr9g1257 846 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 831 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr9g1257 846 Gene3D - 716 809 - -
Apr9g1257 846 MobiDBLite consensus disorder prediction 542 563 - -
Apr9g1257 846 PANTHER AUXIN RESPONSE FACTOR 1 831 - -
Apr9g1257 846 Pfam AUX/IAA family 716 804 IPR033389 -
Apr9g1257 846 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Apr9g1257 846 Gene3D - 125 228 IPR015300 -
Apr9g1257 846 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr9g1257 846 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Apr9g1257 846 CDD B3_DNA 126 227 IPR003340 GO:0003677
Apr9g1257 846 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Apr9g1257 846 SUPERFAMILY CAD & PB1 domains 718 794 - -
Apr9g1257 846 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1257 Apr-Chr9 22202824 22211681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1257 97 817 B3 DNA Binding Superfamily AT5G37020 68.724 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr9g1257 AUX_IAA 7.8e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1257 - - gmx:100780393 1558.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1945 10 32387094 32395321 Apr9g1257 9 22202824 22211681 PCT