Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1235 ATGGCAAAGGGTCGCACCAACAATAAATACGAAGAGGCTCGAAAACAAAGACTTGAAGAAAACAAGAGGAGGTTTGAGCATCATCTTCGTAAATTGAAATCCAAGATTAATGGTGTAGTGGAACCTAGGCGTTCGTCTCGCGTACGAAACCCAATTTGTTCATACCATGAAGATGGGAGCATAAACCTTCCACCATTACGAAAGAGGTCAAGGTCAAATTCTTCATCTTGGGGAAGTTATGCTGCAAGGCCACTAGATGAAATCAAAGAAGCAACAAAAGAGGAAAGAGTTTGTGCTTTGGAGGCTGCAGAGGCACTCCAAAACAATTTGAAGTCTTCAAATCCATCATTTGTCAAGTCAATGGTTCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACACCTCCCAAAAACTGTGTATGACATGATTTTAGAAGATGAAAATGGCTCTGAATATGAGGCTATTTACATTGGCAAAAGATGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCACTGGATCATAAATTGGATGATGGTGATGCACTTGTTTTTGAATTGATTGAAGCTGCAAGATTTAAGTTGACCTTTGATGACCTCAACCAGTTCAACGGCCCACCTAGTCTGCAGCCAAGTCAGCAGGGTGCAACTGCGTCTTGTCCGACTATTTATATTGTTAGAGCATTTTCAGATTCAGTTGAAGAAGAGGAGGGAAAGGATATTTTAGAGGAAGAAGGAAATATGCATGCAACCAAAACACCAAAAACTGCCAGTAATCGTGAATCAAGATCCAACAAGACAAAAAAGAGAAAGCAGGCCATTGTATATGAAACTAAGGAATCAGAGAGTGCTCAGGAACGTCTACCAGAGAGTAGGACAGACAAAGAAGTCAAACCACGAGGGGTAAATCCAACTAAGAAAACTAAATCTAAACTTTCTGCTACTGCTGAGTCAAAAGGGGAAGCACAAAATAAAGCTGAGAAACCAAAGGCATCTGTAAAACTGTCAAACAAGACAAGGAAGTCAAAAGAAGGCAAGAAGAATGGATTTATTCAGGAAGCTGATAGCAAGTTAGAGAAAGTTGAACCGATTGAGAAAGGAAGCAAAAGTGTGTCACAAAAACCTATAAAAAAGCCAGCTCCGAAATGTAATATAGAGAAATTTGATGGAATGATCAATTTTGGCTTGTGGCAAAAACAAGTCAAGGATGTGCTGATACAATCTGGATTACACAAGGCGTGGAAAGGAAAGACTTCCAACACGAAGGAAGAGAAGTGGGAGGAACTAGATTTGAGAGTTGCAAGTGCAATTCGCTTGTGTCTAGCTAAGAATGTTCTTACAAACGTGCAGAAGATGTCGACAGCTAAGGAACTTTGGGAGAAACTCGAAGGCTTATATCAAGCAAAATCCATCTCAAATTGA 1443 0.4047 MAKGRTNNKYEEARKQRLEENKRRFEHHLRKLKSKINGVVEPRRSSRVRNPICSYHEDGSINLPPLRKRSRSNSSSWGSYAARPLDEIKEATKEERVCALEAAEALQNNLKSSNPSFVKSMVRSHVYSCFWLGLPSKFCEEHLPKTVYDMILEDENGSEYEAIYIGKRCGLSGGWRAFALDHKLDDGDALVFELIEAARFKLTFDDLNQFNGPPSLQPSQQGATASCPTIYIVRAFSDSVEEEEGKDILEEEGNMHATKTPKTASNRESRSNKTKKRKQAIVYETKESESAQERLPESRTDKEVKPRGVNPTKKTKSKLSATAESKGEAQNKAEKPKASVKLSNKTRKSKEGKKNGFIQEADSKLEKVEPIEKGSKSVSQKPIKKPAPKCNIEKFDGMINFGLWQKQVKDVLIQSGLHKAWKGKTSNTKEEKWEELDLRVASAIRLCLAKNVLTNVQKMSTAKELWEKLEGLYQAKSISN* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1235 480 Pfam B3 DNA binding domain 117 204 IPR003340 GO:0003677
Apr9g1235 480 Coils Coil 89 109 - -
Apr9g1235 480 MobiDBLite consensus disorder prediction 242 362 - -
Apr9g1235 480 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 202 IPR044837 -
Apr9g1235 480 Gene3D - 91 206 IPR015300 -
Apr9g1235 480 SMART B3_2 117 208 IPR003340 GO:0003677
Apr9g1235 480 MobiDBLite consensus disorder prediction 1 23 - -
Apr9g1235 480 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 30 202 - -
Apr9g1235 480 Coils Coil 15 35 - -
Apr9g1235 480 ProSiteProfiles B3 DNA-binding domain profile. 117 208 IPR003340 GO:0003677
Apr9g1235 480 SUPERFAMILY DNA-binding pseudobarrel domain 112 206 IPR015300 -
Apr9g1235 480 MobiDBLite consensus disorder prediction 328 362 - -
Apr9g1235 480 MobiDBLite consensus disorder prediction 313 327 - -
Apr9g1235 480 MobiDBLite consensus disorder prediction 266 310 - -
Apr9g1235 480 CDD B3_DNA 115 204 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1235 Apr-Chr9 21998247 22004463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1235 10 202 B3 DNA Binding Superfamily AT5G58280 46.667 1.56e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr9g1235 B3 4.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1235 - - aprc:113874447 913.679