Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1229 ATGTCCGTACAGTCAACACTGAAGCACCAGCAGCTGAAGCTTGCAACCCCAAGTTCCCATTTTGAAGGTGACCCACCATGCAAAACCAAGAGGAAACCCCAAAGGAAGCTCGTTCGGATCATAATCACCGACCACGACGCCACCGATTCTGACTCATCCACCGATGAAGAGAGAGAAAACAACCCAACAAAGACCCGAAGAGTGAAGAGAGAAATCACCCAAATCAACATGCTCCTTCCTTTCTCCGATTCCCCGTTGTCTTCTTCTTCTCCTTATTCTTCAACTTCCACTTGCTCCTTCTCTTCTTCCTCCGACCAAAACCCAAACAAGTTCAAGAGACCCAAAAAACCAACACCGCCATCTGCCGCCACGCGCCGCCACAATAAGTTCCGCGGCGTCCGGCAGCGGCCGTGGGGCCGGTGGGCCGCCGAGATCCGCGACCCGACCCGCCGGAAACGCCTCTGGCTCGGAACGTTCGACACGGCGGAGGAGGCCGCCTCTGAGTACGACAAGATGGCGTTGAAGCTAAAAGGTCCCAACGCCGTCACTAACTTCCCCCTCACGCCGGCGGAGGAAACGGCGGTGACGCCGGTTGTCCCCGTCGAAAGTTTGAGCAGCGAAGGCGGCATCTCGTACTCCGACTTAGTGGCCTCGCCGACGTCCGTGTTGGCCTACGACGGCGACTCCACGCCGTTTGATGGCTTCCGTTACGGCGACGTGGACGCCTTTGGGTTCCGCATCGACGCGCCGTTAAGTTTGGCGGAGGTTAACGTTATGCTGACGTGTCATCAGCGTTATGAGGAGGAGGAAGAGGCGTTGGACGAGTTTGATCTCGACGAGTTCATTTCGTGGCCCTACTAA 861 0.5668 MSVQSTLKHQQLKLATPSSHFEGDPPCKTKRKPQRKLVRIIITDHDATDSDSSTDEERENNPTKTRRVKREITQINMLLPFSDSPLSSSSPYSSTSTCSFSSSSDQNPNKFKRPKKPTPPSAATRRHNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAASEYDKMALKLKGPNAVTNFPLTPAEETAVTPVVPVESLSSEGGISYSDLVASPTSVLAYDGDSTPFDGFRYGDVDAFGFRIDAPLSLAEVNVMLTCHQRYEEEEEALDEFDLDEFISWPY* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1229 286 SUPERFAMILY DNA-binding domain 129 187 IPR016177 GO:0003677
Apr9g1229 286 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 281 - -
Apr9g1229 286 PIRSF PTI6 7 286 IPR017392 GO:0003700
Apr9g1229 286 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 31 281 - -
Apr9g1229 286 MobiDBLite consensus disorder prediction 24 71 - -
Apr9g1229 286 SMART rav1_2 129 192 IPR001471 GO:0003700|GO:0006355
Apr9g1229 286 ProSiteProfiles AP2/ERF domain profile. 129 186 IPR001471 GO:0003700|GO:0006355
Apr9g1229 286 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
Apr9g1229 286 MobiDBLite consensus disorder prediction 77 108 - -
Apr9g1229 286 MobiDBLite consensus disorder prediction 1 17 - -
Apr9g1229 286 CDD AP2 129 186 IPR001471 GO:0003700|GO:0006355
Apr9g1229 286 MobiDBLite consensus disorder prediction 1 130 - -
Apr9g1229 286 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Apr9g1229 286 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Apr9g1229 286 Gene3D AP2/ERF domain 128 188 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1229 Apr-Chr9 21925144 21927518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1229 28 225 AP2-EREBP Transcription Factor Family AT4G27950 43.902 2.30e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr9g1229 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1229 K13434 - gmx:100800489 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1908 10 32107415 32108877 Apr9g1229 9 21925144 21927518 PCT