Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1225 ATGGGGATTGAAGTTTGCATGAACGGTTCGTGCAAGAATGGCTCTGCCAGTGAATGGAAGAAGGGGTGGCCACTGCGATCGGGTGGATTCGCTAGGCTATGCAATAAATGCGGATCTGCTTATGAGAATTCAATTTTCTGTTACAAGTTCCACGATCACCAGACTGGTTGGAGGGAGTGCAGCTATTGCAACAAGCCTATCCACTGTGGATGCATAATATCAAGGTCTTTGTTTGAATACCTTGATTTTGGCGGTATAGGTTGTCTTACCTGTGTAAAGGCTTCCCAACTTCCTTTGATACAGGATACTGAAAATACTAACAGGTCTGTTAGATCAATAAAAAATAATGCAAGTGATCGAAATGCTGAACGTATTGATGGTAGACTATTGGTGGATGGTGCTGGCGAAGGAAAACTTATGCAATTGTGTAGAATTGCTGAAGCAAGTGAATCCAGCCATTGGTCTCGACCTCAGAGAGATGGCGTAGATTCATGTATTGGTCCAACCAGGCAAGAGGATAGAAGATTTTCAAATGTGATGAAAGTCTCTAGTCATCCATTAGCGTTTACATCATTAGAAAATAATAAACCAACATGGGAGACTAAAAAGATTGTAGAAGGGAGAATTCAGGGTAAAGCATCTTCTTCTCCCCTTCATCAAGGGCAGGGATCTCAATCCGTATTGTCTAAATCATCAAAGAGTGAGATAACTGCGATTCTTGAACCAAATAAAGGCATTATTTCTCAGGAACGCATTGCCCGGCCACCTGCTGATGGAAAAGGCAAGAATCTGTTACTTTCTCGATACTGGCCCAGGATTACTGATCAAGAGCTGGAGCAATTATCGGGGGATTTGAAGTCTACTATAGTGCCATTATTTGAGAAGGTATTGAGTGCTAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAATCCTGTGCTGAGGCTTATTTTCCTCCTATTTCACAGTCAGAAGGTATTCCATTGCAGATCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAACAACAATAGCAGGATGTATGTATTGGAGGGCGTAACCCCCTGCATACAGTCGTTACAATTAAATGCTGGCGATACTGTGACATTTAGTCGAATAGATCCTGGGGGAAAATTTATTATGGGTTTCAGAAGGGCATCCAATTTGATAGATACACAGGATGCCTCTATTTCTTCTCATTCTAATGGCATTTCAACAAAGGAAACAACCTTTTCTGGTGCAACTAAAATTCTGCCCTCAGGATGTAGTTTTCCTGATCTTCTCCAGTCAGGGAAGGGGAATGGCGAATTTTACATAAATGGACATCCAGAACATCTGCATTTGGGTACTCGAACTGCTGATTCACTTCAAACTGAAAATTGTGAGATGGATAACAATAATTTGTTGCAGCAACCAATTTCGGTTTCTGAGAAGAAAACGCGAAATATTGGACCTAAGAGTAAGAGGTTACTCATACATAATGAAGATGCTGTGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCACCACCTACTGTCAAGCCAAGCATTGTAACAATTGAGGACCAAGTATTTGAAGAATATGATGAGCCCCCGGTTTTTGGAAAGAGAACTATTTTCAATGTCCAGTCATCTGGGTCTTTACACGCTGCAGGCGAGGAGACGAGTCCAAAGGAAATGGACAATATTCTGAGAACTAGCGAAGATTTTAAAAAGCGAAGAATTGTAGAAAAAAGTGCATCAATCCAAGAACACAATCCTTCTGGCTTAGACGCTCTTGCCAGTGCAGCAGTTTTGGGCGATGATCATGTTGACCCTCCTGAGCCATCTGCTGGAGTCACTACCAAACATCCAAGACACCGTCCTGGATGCTCTTGTATTGTTTGCATTCAGCCCCCAAGTGGAAAAGGGAAACATAAACCAACATGCACATGCCTTGCCTGCATGACTGTGAAGCGCCGGTTCAACACCCTGATGACGCGTAAAAGAAAACGGCAATTAGAATGCGAAGCAGATGCTACCCCAGAAGATCATATTCATCACAGGGATGAGACAGATACCAATGGTGCATCAAGAGATGATACAAGTGTGTTGGAGAAAGAGGTAAGCCTGAACAGAGGTGGTGTGGAGGTGGATGAGCCCAGTGCAGGACAAATAGATCTGAATTGTCATCCCAATCATGGAAAGATGCAAGTGGATATAACAGCAGGATTGAGCATGACTAGTCATGTTGAAACAACCAACTTTCCTGCACGCGAATATATGAGTCAAAATGGCCTGAAACTTTGA 2322 0.4289 MGIEVCMNGSCKNGSASEWKKGWPLRSGGFARLCNKCGSAYENSIFCYKFHDHQTGWRECSYCNKPIHCGCIISRSLFEYLDFGGIGCLTCVKASQLPLIQDTENTNRSVRSIKNNASDRNAERIDGRLLVDGAGEGKLMQLCRIAEASESSHWSRPQRDGVDSCIGPTRQEDRRFSNVMKVSSHPLAFTSLENNKPTWETKKIVEGRIQGKASSSPLHQGQGSQSVLSKSSKSEITAILEPNKGIISQERIARPPADGKGKNLLLSRYWPRITDQELEQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGIPLQIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGGKFIMGFRRASNLIDTQDASISSHSNGISTKETTFSGATKILPSGCSFPDLLQSGKGNGEFYINGHPEHLHLGTRTADSLQTENCEMDNNNLLQQPISVSEKKTRNIGPKSKRLLIHNEDAVELRLTWEEAQDLLRPPPTVKPSIVTIEDQVFEEYDEPPVFGKRTIFNVQSSGSLHAAGEETSPKEMDNILRTSEDFKKRRIVEKSASIQEHNPSGLDALASAAVLGDDHVDPPEPSAGVTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCLACMTVKRRFNTLMTRKRKRQLECEADATPEDHIHHRDETDTNGASRDDTSVLEKEVSLNRGGVEVDEPSAGQIDLNCHPNHGKMQVDITAGLSMTSHVETTNFPAREYMSQNGLKL* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1225 773 Gene3D - 271 397 IPR015300 -
Apr9g1225 773 SUPERFAMILY DNA-binding pseudobarrel domain 290 391 IPR015300 -
Apr9g1225 773 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 558 - -
Apr9g1225 773 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 561 771 - -
Apr9g1225 773 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 561 771 - -
Apr9g1225 773 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 558 - -
Apr9g1225 773 MobiDBLite consensus disorder prediction 213 231 - -
Apr9g1225 773 CDD B3_DNA 291 392 IPR003340 GO:0003677
Apr9g1225 773 ProSiteProfiles B3 DNA-binding domain profile. 293 394 IPR003340 GO:0003677
Apr9g1225 773 SMART B3_2 293 394 IPR003340 GO:0003677
Apr9g1225 773 Pfam B3 DNA binding domain 293 393 IPR003340 GO:0003677
Apr9g1225 773 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1225 Apr-Chr9 21834102 21840988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1225 1 747 B3 DNA Binding Superfamily AT2G30470 46.725 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr9g1225 B3 5.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1225 - - gmx:100789848 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1901 10 32036405 32044010 Apr9g1225 9 21834102 21840988 PCT