Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1223 ATGCAAGATCCGTCTTCAAACCCTAATGACAATCCAAATCCTCACAATGCCAATGCAGCTTCCCAATTACCACCAACGCCGCCGGCCACTACCGCCGCCGGCGTCTCCTCGTCCTCGTCTTCGATGTTCGCGCGCTCCGGCTGGTCTCACCACCGGAGAGCCCACTCGGAGGTGAGTTTCCGGCTGCCGGACGACATGATGGACTTGTCGCAGTCCGATCCGTTAGCCGGCGGGTCGTCGACGGCGAGCATGGAGGAGATCGGATCCGAAGACGACCTGTTCTCGACGTACATTGACGTGGACAAGCTCGGAGGTGCAACCGGTTCGGGTGGCGCCGGAAACGGAGCGGATCCGAACGGCGAACGCGAGAAGAGCCCGAGGCCGAGACATAGGCACAGTAGTTCCGTCGATGATTCTTCGTCGTTCGGCGAAATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAATTAGCTGAGTTATGGTCAATTGATCCCAAGCGTGCCAAAAGAATAGTTGCGAATCGACAATCTGCTGCTCGATCGAAAGAGAGAAAGGCTCGGTATATACAAGAACTTGAGCGCAAGGTTCAAACTCTTCAGACTGAAGCCACAACTCTTTCTGCTCAATTGACATTATACCAGAGGGACACAACAGGCCTGAGTACTGAAAATACAGAGCTTAAGCTCCGTCTGCAGGCCATGGAGCAACAAGCACAGCTTCGTGATGCTCTTAATGAAACATTGAAGAAGGAAGTTGAGAGGCTTAAGGTTGCTACTGGGGAGATGATGAGCCCCACTGAATCTTTTAATCTAGGAATGCACCAGATGCCATTTACAGGATCAAATTTTATGCCAATCCCACCACAATCAGGTCCTTCTGGTCACCAGAACATCCAGTTGTCACCATTTGGTCACTCCCCATCTACAATGCCAACTCATCAACTGCAACAAACCAATTCTTATCCATTTTCAGAAATATTGCGAAATGACCAGCTTGGTCGTTTCCAGGGCCTTGACATTAGTAGCAAAGGATCAACTCTCGTGAAATCCGAGGGCCCCTCACTTTCTGCAAGTGAGAGTAGCACTGCATTTTGA 1095 0.5087 MQDPSSNPNDNPNPHNANAASQLPPTPPATTAAGVSSSSSSMFARSGWSHHRRAHSEVSFRLPDDMMDLSQSDPLAGGSSTASMEEIGSEDDLFSTYIDVDKLGGATGSGGAGNGADPNGEREKSPRPRHRHSSSVDDSSSFGEIMEAKKAMPPDKLAELWSIDPKRAKRIVANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNETLKKEVERLKVATGEMMSPTESFNLGMHQMPFTGSNFMPIPPQSGPSGHQNIQLSPFGHSPSTMPTHQLQQTNSYPFSEILRNDQLGRFQGLDISSKGSTLVKSEGPSLSASESSTAF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1223 364 MobiDBLite consensus disorder prediction 280 315 - -
Apr9g1223 364 MobiDBLite consensus disorder prediction 344 364 - -
Apr9g1223 364 Coils Coil 182 209 - -
Apr9g1223 364 Gene3D - 165 217 - -
Apr9g1223 364 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 2 361 - -
Apr9g1223 364 Coils Coil 234 261 - -
Apr9g1223 364 MobiDBLite consensus disorder prediction 1 46 - -
Apr9g1223 364 MobiDBLite consensus disorder prediction 1 142 - -
Apr9g1223 364 MobiDBLite consensus disorder prediction 120 137 - -
Apr9g1223 364 CDD bZIP_plant_RF2 167 216 IPR044759 GO:0003700|GO:0006355
Apr9g1223 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 164 227 IPR004827 GO:0003700|GO:0006355
Apr9g1223 364 SUPERFAMILY Leucine zipper domain 166 217 IPR046347 GO:0003700|GO:0006355
Apr9g1223 364 Pfam bZIP transcription factor 166 221 IPR004827 GO:0003700|GO:0006355
Apr9g1223 364 SMART brlzneu 162 226 IPR004827 GO:0003700|GO:0006355
Apr9g1223 364 PANTHER ATBZIP TRANSCRIPTION FACTOR 2 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1223 Apr-Chr9 21823580 21825858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1223 1 358 bZIP Transcription Factor Family AT2G40620 51.500 7.41e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr9g1223 bZIP_1 4.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1223 - - vra:106763153 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1892 10 31951818 31955061 Apr9g1223 9 21823580 21825858 PCT