Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1221 ATGGCCGCCAAGGCATCTTTAATGATGCCATTTATGTTAATTGGTCTCATTGGTGTTGTTTGTGCTTCTGTCTATGATGATCAGTTTTGTGGCCATGCTACTCTCTTTGATGCTGCTGGTGCTTCTTTTTTAGGAGGGGCAAGTGGTAATGGGAATTACGGAGCTAACACTGCATTACTAGACGAAACTTCCTATAAAAATGGTTTGATGCATAATGCTTGCTTTAGAATAGACTGCGCCTGTAAGCCTCGGTGTAAGTCAGTGACCACTAATGTTACTATTACTGGCCATTTCCGACCAAATTCTACTTTTTCCTGCAATAATGGATCGGGCAACCCTTTGCTACAATTCTTATTGCAAAAAGGAACCTTGCTGACAATCGCTAATGACAAAGTTACCGATACTCCAGTGAATGCTAGAAGGGCGTTGTGTGGGCGAGTAGGGGGCATAAAGTTTACAATCACAGGCCACGATAACTTCACCCGGGTTTTGCCAGAAAATATGGCAGGTGCAGGGAATATTAAAAAACTGTTTATCAAAGGGTCAGGAGATAAGTGGCAACTCATGCAATGGGATGGGGACGGATACTGGCGGATCAACTGCTCCTTCATTGGAGAAAGTCTCTCTTTTCGGATCATTGCCGGTGACGATGCAAGATTGTCATGCAACACTGTATTCGACGCCCAGTGGACTCCTGGCCAAACTAATGACACTACTGGGTGTCAGTTTAATCCGAGTGGGACACACAACTAA 753 0.4436 MAAKASLMMPFMLIGLIGVVCASVYDDQFCGHATLFDAAGASFLGGASGNGNYGANTALLDETSYKNGLMHNACFRIDCACKPRCKSVTTNVTITGHFRPNSTFSCNNGSGNPLLQFLLQKGTLLTIANDKVTDTPVNARRALCGRVGGIKFTITGHDNFTRVLPENMAGAGNIKKLFIKGSGDKWQLMQWDGDGYWRINCSFIGESLSFRIIAGDDARLSCNTVFDAQWTPGQTNDTTGCQFNPSGTHN* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1221 250 Gene3D - 21 144 IPR036908 -
Apr9g1221 250 Pfam Expansin C-terminal domain 150 224 IPR007117 -
Apr9g1221 250 PANTHER EXPANSIN-A15 6 238 IPR002963 GO:0009664
Apr9g1221 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Apr9g1221 250 SUPERFAMILY PHL pollen allergen 148 235 IPR036749 -
Apr9g1221 250 PANTHER EXPANSIN 6 238 - -
Apr9g1221 250 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Apr9g1221 250 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Apr9g1221 250 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Apr9g1221 250 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Apr9g1221 250 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Apr9g1221 250 Gene3D - 149 243 IPR036749 -
Apr9g1221 250 SUPERFAMILY Barwin-like endoglucanases 22 166 IPR036908 -
Apr9g1221 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1221 Apr-Chr9 21768771 21770678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1221 31 235 Expansin Gene Family AT2G40610 39.070 1.92e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1221 - K20628 aprc:113848471 510.76