Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1188 ATGCTGTCTGGGGATATACCTCCGAACCAGACCATTTACATCAAGAATCTCAACGAGAAGGTCAAGAAAGATGAATTGAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGAATTTTGGACGTTGTTGCTCTAAAGACACCCAAGCTTCGAGGACAGGCATGGGTTTGTTTCAGTGAAGTCACTGCTGCCAGTAATGCAGTGCGACAAATGCAAAACTTCCCATTTTATGATAAACCTATGCGAATTCAATATGCTAAAACAAAGTCGGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGCGCTGAAGAAGCACAGCAATCTGGGGTGGCTAATGGAACTCATAGTGCAAGTAATGGTGGTCCAACAGCCTCATTCCGTCAAGGACCCAGCACTCAAGAAGCAGCTGCTCCTAACAATATATTGTTCATAGAGAATTTGCCTCATGAAACTACCGGTAGGATGCTCGAAATGCTCTTTGAACAATATCCAGGTTTTAAGGAAGTGCGCTTGATTGAAGCAAAGCCGGGTATTGCTTTTGTTGATTTTGAAGATGAGGTGCAATCATCCATTGCCATGCAAGCTCTTAATGGCTTCAAAATCACCCCTCAGAATCCCATGATTATAACCTTTGCAAAGAAGTAG 699 0.422 MLSGDIPPNQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSGVANGTHSASNGGPTASFRQGPSTQEAAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSIAMQALNGFKITPQNPMIITFAKK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1188 232 CDD RRM1_U1A_like 11 88 - -
Apr9g1188 232 Gene3D - 148 232 IPR012677 -
Apr9g1188 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Apr9g1188 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Apr9g1188 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Apr9g1188 232 MobiDBLite consensus disorder prediction 98 123 - -
Apr9g1188 232 MobiDBLite consensus disorder prediction 98 150 - -
Apr9g1188 232 MobiDBLite consensus disorder prediction 125 150 - -
Apr9g1188 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 4 232 - -
Apr9g1188 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Apr9g1188 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Apr9g1188 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 4 232 - -
Apr9g1188 232 Gene3D - 4 117 IPR012677 -
Apr9g1188 232 Coils Coil 104 126 - -
Apr9g1188 232 CDD RRM2_U1A_like 156 228 - -
Apr9g1188 232 SUPERFAMILY RNA-binding domain, RBD 8 220 IPR035979 GO:0003676
Apr9g1188 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1188 Apr-Chr9 21375827 21379212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1188 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.458 8.11e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1188 K11094 - gmx:100805822 430.254