Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1186 ATGGCTTCATTTCTTAGCTTCTCAGAAATATCGTTGCCCAATAGAAACCAAAGCCTTGTGCAATACGTTTTGCCATCTCCAACAACTGGGGCATTTGCTGCTCAGAGTTTCAACTGGAAGAACAGTTCTGGCCAAAACCAGCGAATTGTGAAAGAAGAAGACAAAAGCTTCTCGAATTTCTCATTCCAAACCCAACCAGGACCTCCTGCTACATCCACAACAACATTTCAATCTTCAACCGTTTCAGTTCAAACACAACCACCACCACCATGGAGTTTTCAGGAAGCCACAAAACAGGATGGTTATTCTTCAGGGAAGGGTATGATGAAAACTGAAAACAATTCTTCCATGCAGAGTTTTTCTCCTGAGATAGCTAGTGTCCAAACTAACCATAACAATGGGTTTCAATCTGATTATGGCAACTACCCCCAACAATCTCAGACCTTAAGTAGAAGATCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAACAAGTTAAAGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCCAATTGTCCTACAAAGAAGAAAGTTGAGAGGTCTTTGGATGGACAAATCACTGAGATTGTTTACAAGGGTACTCACAACCATCCCAAGCCTCAGTCCACTAGGAGAAACTCATCATCTTCATCCTCTCTTGCAATCCCTCCTTCAAATCCCATCAGCACTGAAATTCCAGATCAATCATACGCTACTCATGGCAGTGGACAAATGGATTCAGCTGCCACCCCTGAGAACTCATCAATATCAATAGGGGATGATGATTTTGAGCACCAGAGTTCCCAAAAGTGTAAATCAGGAGGAGATGAGTTTGATGATGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGTGAAAATGAGGGTACGTCAGCGCCTGGAAGTAGAACAGTGAGAGAGCCAAGGGTTGTAGTTCAGACCACAAGTGACATTGATATTTTAGATGATGGGTACAGATGGAGAAAATACGGGCAGAAAGTAGTAAAGGGTAATCCAAATCCAAGGAGTTACTACAAGTGTACACACCCAGGATGTCCAGTGAGGAAGCATGTAGAAAGAGCCTCACATGACCTAAGGGCTGTTATCACAACCTATGAGGGAAAGCACAACCATGATGTCCCTGCAGCACGTGGCAGTGGTAACCATTCTGTCAATAGACCAATGCCAAACAATGCTGCAAACCCCACCAGTGCAGCCACGGCCATTAGACCCTCAGCAGTGACCCACCACACTAACAATTCTCTTCAGAGTCAAAGACCACAAGCACCACCAGAAGGGCAATCTCCCTTTGCTTTGGAGATGCTGCAGAGCCCAGGAAGCTTTGGATTCTCAGGGTTTGGGAATCCAATGGGATCTTACATGAATCAGCAACAACTATCTGACAATGTGTTCTCCAGAGCCAAGGAGGAGCCCAGAGATGACATGTTCCTTGAATCTTTGCTATGCTGA 1485 0.4404 MASFLSFSEISLPNRNQSLVQYVLPSPTTGAFAAQSFNWKNSSGQNQRIVKEEDKSFSNFSFQTQPGPPATSTTTFQSSTVSVQTQPPPPWSFQEATKQDGYSSGKGMMKTENNSSMQSFSPEIASVQTNHNNGFQSDYGNYPQQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLAIPPSNPISTEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEHQSSQKCKSGGDEFDDDEPDAKRWKIEGENEGTSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNHSVNRPMPNNAANPTSAATAIRPSAVTHHTNNSLQSQRPQAPPEGQSPFALEMLQSPGSFGFSGFGNPMGSYMNQQQLSDNVFSRAKEEPRDDMFLESLLC* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1186 494 Pfam WRKY DNA -binding domain 154 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 Pfam WRKY DNA -binding domain 327 383 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 Gene3D WRKY domain 313 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 469 IPR044810 GO:0003700
Apr9g1186 494 MobiDBLite consensus disorder prediction 268 288 - -
Apr9g1186 494 MobiDBLite consensus disorder prediction 395 436 - -
Apr9g1186 494 MobiDBLite consensus disorder prediction 378 444 - -
Apr9g1186 494 Gene3D WRKY domain 140 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 ProSiteProfiles WRKY domain profile. 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 MobiDBLite consensus disorder prediction 208 267 - -
Apr9g1186 494 SMART WRKY_cls 153 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 SMART WRKY_cls 326 385 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 MobiDBLite consensus disorder prediction 128 157 - -
Apr9g1186 494 SUPERFAMILY WRKY DNA-binding domain 318 386 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 MobiDBLite consensus disorder prediction 203 288 - -
Apr9g1186 494 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 21 469 - -
Apr9g1186 494 ProSiteProfiles WRKY domain profile. 321 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 SUPERFAMILY WRKY DNA-binding domain 152 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g1186 494 MobiDBLite consensus disorder prediction 128 153 - -
Apr9g1186 494 MobiDBLite consensus disorder prediction 63 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1186 Apr-Chr9 21354654 21358006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1186 151 493 WRKY Transcription Factor Family AT2G38470 56.583 4.05e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr9g1186 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1186 K13424 - gmx:100127393 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1848 10 31527195 31530726 Apr9g1186 9 21354654 21358006 PCT