Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1180 ATGCCTTTCCAAATTCCCAAACGGCGAGTACAGAAAAAGCTATGGAGAGTTCTGGGATTCTTATCAAGTGTCATTGGACTAATCTGTTATGCATTGAGTTCCTCTTTCAAACATATATTTGGAGAGTGGAACTTGTTGAAGATCACCCTTTACACCATGGTAAGTTTCTGTATCAGCAGCATGATGTTATTTTTGAAAACATGGAATCTTTCTAAGAGTTTCTTGATGAAAGCTCACGTGGGTGTTCTAGTTTTGTTGCTCACTTCCTTTTACTCCTTTGTATATGATAAGGATGAGAATGGAAAACCAGACCTATTAAGTTTGATTTCATGTGGAGCCCTTGCTTTTATGTCTTTGTGCTTGTCAAGGCAAATTGACCTTGGGTTTGAAGCGGATCTCCTCAATTTCTTCCTTGGTTGTCTAACTGTTCAACTTATGATGATCAACTTGATGTTGTCTATAGTTGCAGCAATTTTCTGCTACTGTCTCATGGTTCTACGTTCCAAATTTGAGTCTAAAACACATGTTGGAACTCGAAGAATGGAAGACCACGTAAACATAGACATTGATGCTGCAGAAGAAGTAGAAAGAGAAGCCGATGACAACACAAGTGTCTTACAGTCTCAGTATAGCAACAGTCACCAACAAAGTCAGGGGTTAAGAAGAAGGGTGGGTGATGGGTACAATTGGAAAAAGTATGAAGTGAAATTAGTGAAAGGGGGTGAAAATCAGATAAGCTACTACAAATGCGCACAACCCAATTGCACTGTGAAGAAAAAAGTTGTGAACACTATTGAAGGGCAAATTGTTGAAACACGCTACAGGAGTATCCATAACCATTACAAGCCTGCGGATAGTTTGAAGAGGAACCCATCATCTGAATATTTTTATTCACTTCTACCTTCAGAGCCTGTCCCCACTGACTTGCCAGATGCCTCTTACAGCAAGAGACAATTGGAAATTCACAAACTAAAGAGTTCAATATCAATATGA 993 0.3917 MPFQIPKRRVQKKLWRVLGFLSSVIGLICYALSSSFKHIFGEWNLLKITLYTMVSFCISSMMLFLKTWNLSKSFLMKAHVGVLVLLLTSFYSFVYDKDENGKPDLLSLISCGALAFMSLCLSRQIDLGFEADLLNFFLGCLTVQLMMINLMLSIVAAIFCYCLMVLRSKFESKTHVGTRRMEDHVNIDIDAAEEVEREADDNTSVLQSQYSNSHQQSQGLRRRVGDGYNWKKYEVKLVKGGENQISYYKCAQPNCTVKKKVVNTIEGQIVETRYRSIHNHYKPADSLKRNPSSEYFYSLLPSEPVPTDLPDASYSKRQLEIHKLKSSISI* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1180 330 SMART WRKY_cls 224 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1180 330 Gene3D WRKY domain 215 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g1180 330 SUPERFAMILY WRKY DNA-binding domain 223 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g1180 330 Pfam WRKY DNA -binding domain 226 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1180 330 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 282 IPR044810 GO:0003700
Apr9g1180 330 ProSiteProfiles WRKY domain profile. 226 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1180 330 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 3 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1180 Apr-Chr9 21227765 21230173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1180 226 284 WRKY Transcription Factor Family AT2G38470 46.667 2.52e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr9g1180 WRKY 3.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1180 - - gmx:102667674 411.379