Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1176 ATGTCACCAAGATTTCGAAAACTGTTAACTCAACCCAAGTTCTGGAGAAGTGTGGGATTTGTGTCGAGTGTTATTGGGATGCTGTGTTATGCGTGGGCCCTGGTTTTAGACCACTTTGGAGAAAAGTATCACATTTTGAAGATCTCTCTTTACGGCGTGGTGAGTTTCACAGTCATCTGTGTTATGCTATTTCCAAAGGTATTGCGGTTTACAAAGAGTTTCTTGTTGAAAGCTCTAGTGGGACTTTTGGCTTTGATGCTAACTTCTCTGTACAATTTTTTCAGTGATAAAGACTCAAATACAAAAATATGTGTGCTTAGCTTAATTTCTAATGCGTCATTTGCTTTAATGTTATTGAGCTTGTCAAAGCAAAATGACCTTGGGTTTGAACCGGAACTGCTTAATTTTTATCTTGGGTGTCTTACAATACAACTAATGAAGGTAAACTTGTGGTTCATTTTGGTTGGAGCAACTTATTGTTATTTTCTCAACGTTCTTCACTCGCATTCAGACTTCAAGCTAGAGATTGGAAGAGACAGTGGCCACGAAGAGCACGTGGCAATTGAAATTGACACTGCCATGGGAGAAGAAAGAGAAGCCAACACTGATCACATAGAACAACTCTATTTCTTTCTGGGAATTGATATTAAAAATGATGATGAGGACACAGTTTTGTACCCTCATGATCTAGAAATCAAACTTGTGGAGGCAATGGTTTCAGGGTTTGAGCAAGAGCACTGTTACCATGTTTTCTGTGGTTGGCGAAGACAATTCTTGGAGGAAAAGTTGTTACAGAACCTCATAAGCATCGAAGACGTTCACAAGATGCCACTGAAATATCTTAAAGACAAAATTGAACGATGGGTCCAAGCTTCCAAAGATGCTTTCAGGTCACTATTCCCGAATGAACGGGATCTCAGTAATCGTGTTTTCGGGTTCTCTCCTTTTGCAGATCGTTCTTTCATGGTGATTTGCAATGACCCCACAATTTATCTGCTGAATTTCGCCAATGCTGTGGCTAGTACAAGCCGATCACCAGAGCGTTTGTTCAGAATACTAGTAGTCTATGAGAATCTCAATGAACTTTTGCCTGATTTGGAGTCATTGTTCTCAGGTGATGATGAGTGGTGTGTGGTTCTTTTGAATGAGGCAAAAAGAATCTATAAAGGGTTGAGAGAAGCTATTAGAGGGGTTTTTATGGAGATGGAAAATCTAATTCGTCAGGACCCAGCAAAGGTAGTTGTTTTAGGTGGTGGGCTTCATCCAACAAACCGCTATGTTATGAACTACCTCTTTGGCGCTTGTCAATGTTGGAAGACCCTTGAGCTTGCTTTTGAGGATGAAGGGTCACCTTCTTCTTCATTGTCTATTCAGGTGGCTCAGATTTTGGACTTGTTGGAGAGAAACTTGAAAGCCAACTCCAAAATTTACAAGGACTCTTCCTTGTGCTCAATTTTCATGATGAACAATTGGAGGTACATAGTTCACAAGGTGGAAAAATGTGAACTAAGAAGAGTGTTCGGAGAAGACTGGATTCAAAACCACGTAGTGAAAATGGGTCAACACCTTGTGAACTACCAAAGAAATTCGTGGAATCAGGTACTTGGCATATTGAATGTAGAACCTGATGAATCTGCAGAATCGTGGAAAGAAAAGCTCAATATGTTGAAGTTGATATTAGAGGAGATAAGTCAAATGCAGGGAACGTGGGTTGTTATTGATGACCAGATAAGAGAAGTGATAAGAAGATGTTTGAAGAAAACTTTGTTGCCAGCGTTTGAAAATTTCATTGAAAGAGTCCAAAACGCTGGGGATTATCGAGGAGGTGTCGGCATGAATGAGGATTTTGGGGTCCATGATGTTGTGGCTCTTGTAGAAAAGCTGTTCCAGGGAAAAGACGAGCACCGAAAACCCAGAGTTATTCAGCCAACATGGACGGTGGTCATGCCCAATACACAAGATTTTCATGAATGGGTGAAGTACGCTCAGAAGACAATCCTTAGTTCTACTTACCCAAGAAAATACTACAAGTGCATCTACAAGAATGATCAAGGTTGTCGAGCAAGAAAACACGTTCAACAAACACAAGACAATCCAAAGATGTACACGACTAGCTACTCTGGTTTTCATACATGCAATGTGCGTCCATAA 2151 0.4049 MSPRFRKLLTQPKFWRSVGFVSSVIGMLCYAWALVLDHFGEKYHILKISLYGVVSFTVICVMLFPKVLRFTKSFLLKALVGLLALMLTSLYNFFSDKDSNTKICVLSLISNASFALMLLSLSKQNDLGFEPELLNFYLGCLTIQLMKVNLWFILVGATYCYFLNVLHSHSDFKLEIGRDSGHEEHVAIEIDTAMGEEREANTDHIEQLYFFLGIDIKNDDEDTVLYPHDLEIKLVEAMVSGFEQEHCYHVFCGWRRQFLEEKLLQNLISIEDVHKMPLKYLKDKIERWVQASKDAFRSLFPNERDLSNRVFGFSPFADRSFMVICNDPTIYLLNFANAVASTSRSPERLFRILVVYENLNELLPDLESLFSGDDEWCVVLLNEAKRIYKGLREAIRGVFMEMENLIRQDPAKVVVLGGGLHPTNRYVMNYLFGACQCWKTLELAFEDEGSPSSSLSIQVAQILDLLERNLKANSKIYKDSSLCSIFMMNNWRYIVHKVEKCELRRVFGEDWIQNHVVKMGQHLVNYQRNSWNQVLGILNVEPDESAESWKEKLNMLKLILEEISQMQGTWVVIDDQIREVIRRCLKKTLLPAFENFIERVQNAGDYRGGVGMNEDFGVHDVVALVEKLFQGKDEHRKPRVIQPTWTVVMPNTQDFHEWVKYAQKTILSSTYPRKYYKCIYKNDQGCRARKHVQQTQDNPKMYTTSYSGFHTCNVRP* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1176 716 Gene3D WRKY domain 639 707 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g1176 716 SUPERFAMILY WRKY DNA-binding domain 649 714 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr9g1176 716 SMART WRKY_cls 652 714 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1176 716 Gene3D Exocyst complex component Exo70 203 638 - -
Apr9g1176 716 SUPERFAMILY Cullin repeat-like 233 629 IPR016159 -
Apr9g1176 716 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 25 601 - -
Apr9g1176 716 ProSiteProfiles WRKY domain profile. 654 715 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1176 716 Pfam Exo70 exocyst complex subunit 286 602 IPR046364 GO:0000145|GO:0005546|GO:0006887
Apr9g1176 716 Pfam WRKY DNA -binding domain 654 713 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr9g1176 716 PANTHER EXOCYST COMPLEX PROTEIN EXO70 25 601 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1176 Apr-Chr9 21198736 21201750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1176 228 637 EXO70 exocyst subunit family AT5G58430 48.598 2.76e-122 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr9g1176 Exo70 5.2e-80 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1176 K07195 - aprc:113848528 1451.8