Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1172 ATGTTGCACAGAGATGCTGCAGCAGGTGGAACTTCTTCTTCTCTGAGGGAAAATGACGTATTCATAAGCTTCAGAGGAGTGGATACACGCAGCAACTTCACCAGCCATCTTTATGCCGCTCTGTGTCGGAGCAAGATCATAACCTACATTGATTTCACACTTGGGAAGGGTGACCAGATCTCTGAAGCACTCACGAAGGCAATCGAAAATTCGTATGTCTCGCTGGTGATATTCTCGGAAAACTACGCATCGTCGTCGTGGTGCTTAGATGAGCTCACCCACATAATGAAGCAGCGCACAAAGTGGGGCCAGATTGTGATACCTGTGTTCTACAACGTAGACCCGTCGCATGTAAGGAAGCAGTCTGGGAGTTATATGATTGCGATTGAGGAGCATGCGCGTGATCCCAAGCACAGCATGGAGAAGGTGAACCAGTGGCGACTTGCTCTGACTCAAGCAGCCACTTTGGCTGGATGGGACTCTCGTCAATATATGCTGGAATCTGAACTCGTGGACGACATTGTACAAGATGTTTCGGGAAAACTGCAAAATAAACATCCAAGCAAATCTACTGGCCTCGTCGGAATTGAAAAAAATTATGCATGTATTGAATCATTGCTGAGAACTGAGTCAAGAGAAGTTCGAGTGATAGGAATTTGGGGTATGGGTGGCATCGGTAAGACAACCGTTGCTACAGCTATATTTGCCAATTGCTCCTCTCAATTCGAAGGATGCTGTTTCTTGGAAAATGTTGGAGATGACTCAGACAAGCATGGATTGACTTATCTACACAATAAACTTGTGTCTGCTTTACTAGAAGGAGAAAATTTTTGTAAGAGCAGGCTTGGTAAAAAAAAAGTTCTTCTTGTGCTAGATGATCTAAGAACTCTAGAGCAGCTAGATTATCTAGTTGGAGAACTAACTAGCTTGGGACCTGGTAGTAGAGTGGTTATTACAACTAGAGATAAGCAAGTGCTTAGGGGAGCGAATGAAATATGTGAGGTGAAACCATTGAACTTCGATGAATCTCTTCAGCTTTTCAGTTTAAATGCATTCAACAAAGACCACCCAGATATTGGTTTTGAACAGCTATCAGAAAGAGTGGTTATTTATGCAGATGGCATTCCATTAGCTTTAAAAGTTCTAGGTTTGTTTTTTCGCTCCAAAAGTGAAGAAATATGGGAAAGTGCACTGACAAAACTCAAGAAAATTCCCAATACAGAAATTCAGAATTTATTGAGACTGAGTTATGATAGCTTAGATGATACAGAGAAAGACATATTTTTGGACATTGCTTGCTTTTTGAAAGGAGAGGATAGAAAATATGTGACAAGCCTACTAGATGCCTGTGACTTCTATGCCGGAGTTGGAATAGAAACCCTTTTGGAAAAAGCTCTCGTTACTATTTCAAATAACAATGAATTGCAAATGCATGCATTGATACAGGAAATGGGCTGGGAAATTGTTCGTCAAGAATCTATTAAAAACCCAGAGAGACGCAGTCGGTTGTGTCATCATGAGGAAGTCTATGATGTGTTAACAAATAACACTGGCACTAATTCAATTGAAGGTATAAGCATTGATGTCTCACGAACTAGAGGTATGAACTTGAGCTCTGACGTTTTCCGACAAATGAATAAACTAAGATTTCTCAAGTTCTACTCTCGTTTGGGGGAGAGATGTAATGTTTACCTTCCCACTGGTCTTGAGTCATTGTCTAATAGATTACGGTACCTCCATTGGAGTGGATATCCTTTGGAGTCACTACCATCAGCCTTTTGTCCTGAGAAACTGGTTGAGATTTCCATGCCAAACAGTCGGGTTGAAAAACTATGGAATGGAGTCCAGAATGTTGAGAATTTACTGAAAATTGACCTTAGTGGCTCTGAACATTTGATTGAGCTTCCAGATTTCTCTATGGCATCAAATCTTCAAAATGTAAACTTATCTGGGTGTGTAAGGCTGCCTCATGTTCACCCATCAATTTTATCTCTCAGAAGGCTTGTCAATTTAAACATGGTTAGGTGCAAAAAGCTTAAAAGACTTCTAAGCAATGACCCATTAAGATCTCTCAGAATTCTTGAGCTTTATGGCTGCTCAAGTCTAAAGGAATTTTCAGTGACATCTGAAGAAATGACATATTTGGATTTAAGAAGTACTGCTATTAATGAATTGCCATCATCAATTAAGCATCTTGGTAATCTTATAAACTTGGAGCTAAGTTGCTGTGGATGTCTTAGGAGTCTTCCAAATGAGTTCGCGAGTCTGAGATCTCTTGGCCGCTTGGTACTTTCTGATTGCAGACAGCTTGACACATCAAATCTGCATTTTCTGTTTGATGGCCTACGTTCTTTAGGATACTTGTGTCTTGATAATTGTTGTAACTTAACTGAACTCCCTGATAACATCTCTCTGTTATCATCATTGTATTATTTATCACTTAGTGGAAGCAATGTGGGGAACTTGCCTACTAGTGTCAAGCTACTTTCCCACCTAGAATCTCTTGACTTGTGCAAATGCAGGAGGCTTCAGTCTCTACCAGAGCTCCCAGAATCCATTGAAGTGTTGGATGCCACCAATTGTCCATGCTTGGAGATAGTGTTTGCCTCTCCTGTTATTGATGAACTACTGCAAGAGCACAAGTTGTTCATTTCCTTCAAAAATTGTGTTAAATTGAATGAACATTCCCTCAATGTTATCATGACAGATGCTCATGTCAGAATAAAGGAGGTAGCATATGTTCATGTATCAGCAAAAATAGAGAGGAGTGAACCCTGTTACTATTTCAAATCAGAGTTTATGTCTTCTTATCATCATCCACCAACTGTTATTTTCCCAGGAAGTAGAGTTCCAGACTGGTTCAATTATCGGTCAACAAAGGCATCGATAACCGTTGAACTTTTGCATTCTCCTCAGTGCAACTTATGTGGTTTCATTTTCTGCCTCATTCTTCCTCCATCCTCCTCAAATGAAAATAATTGCAATTGGAAGATTGGATGTGAATGCTACTTGGAAAGTGATGAAAGGATCATCAACACAAGTATGTGCTCTTTTGCAACAGGATTGGTATCAGATCACGTGTACTTGTGGTATGATGAAAATTTTTGTCTTGAGATGAATACAATTGTGGAAAGCAGAACCAATGATCAGTACACTGCTTATAACTTACAGCTTTCATTTAAATTCTTCGTTGAAACTGAGGATAAGATGAATATGATGATTAAAGAGTGTGGGATCTGCCAAATATATGGTTCAGAATATCTCAATTTCGTTGAACAATTGGGATTTGAATCGGAGTTGGGAGATAACATGAAGAGAAGCAGGGATATTTATGAGTTGGAATCAAGTGGAAGAAAAACTGAAGTTGATGGCCTTGTTGAGCATGAAGATGAACAAGAAGATTCATTTCATCAATCAAAGAAACAGAAGGTATTATCTTCTAACTCATTTAAACAAAAACCTAGAAGGAAAAAAAATCTATGA 3483 0.3951 MLHRDAAAGGTSSSLRENDVFISFRGVDTRSNFTSHLYAALCRSKIITYIDFTLGKGDQISEALTKAIENSYVSLVIFSENYASSSWCLDELTHIMKQRTKWGQIVIPVFYNVDPSHVRKQSGSYMIAIEEHARDPKHSMEKVNQWRLALTQAATLAGWDSRQYMLESELVDDIVQDVSGKLQNKHPSKSTGLVGIEKNYACIESLLRTESREVRVIGIWGMGGIGKTTVATAIFANCSSQFEGCCFLENVGDDSDKHGLTYLHNKLVSALLEGENFCKSRLGKKKVLLVLDDLRTLEQLDYLVGELTSLGPGSRVVITTRDKQVLRGANEICEVKPLNFDESLQLFSLNAFNKDHPDIGFEQLSERVVIYADGIPLALKVLGLFFRSKSEEIWESALTKLKKIPNTEIQNLLRLSYDSLDDTEKDIFLDIACFLKGEDRKYVTSLLDACDFYAGVGIETLLEKALVTISNNNELQMHALIQEMGWEIVRQESIKNPERRSRLCHHEEVYDVLTNNTGTNSIEGISIDVSRTRGMNLSSDVFRQMNKLRFLKFYSRLGERCNVYLPTGLESLSNRLRYLHWSGYPLESLPSAFCPEKLVEISMPNSRVEKLWNGVQNVENLLKIDLSGSEHLIELPDFSMASNLQNVNLSGCVRLPHVHPSILSLRRLVNLNMVRCKKLKRLLSNDPLRSLRILELYGCSSLKEFSVTSEEMTYLDLRSTAINELPSSIKHLGNLINLELSCCGCLRSLPNEFASLRSLGRLVLSDCRQLDTSNLHFLFDGLRSLGYLCLDNCCNLTELPDNISLLSSLYYLSLSGSNVGNLPTSVKLLSHLESLDLCKCRRLQSLPELPESIEVLDATNCPCLEIVFASPVIDELLQEHKLFISFKNCVKLNEHSLNVIMTDAHVRIKEVAYVHVSAKIERSEPCYYFKSEFMSSYHHPPTVIFPGSRVPDWFNYRSTKASITVELLHSPQCNLCGFIFCLILPPSSSNENNCNWKIGCECYLESDERIINTSMCSFATGLVSDHVYLWYDENFCLEMNTIVESRTNDQYTAYNLQLSFKFFVETEDKMNMMIKECGICQIYGSEYLNFVEQLGFESELGDNMKRSRDIYELESSGRKTEVDGLVEHEDEQEDSFHQSKKQKVLSSNSFKQKPRRKKNL* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1172 1160 MobiDBLite consensus disorder prediction 1114 1140 - -
Apr9g1172 1160 SUPERFAMILY "Winged helix" DNA-binding domain 407 513 IPR036390 -
Apr9g1172 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 431 IPR027417 -
Apr9g1172 1160 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Apr9g1172 1160 MobiDBLite consensus disorder prediction 1114 1160 - -
Apr9g1172 1160 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 159 IPR035897 -
Apr9g1172 1160 Pfam TIR domain 19 195 IPR000157 GO:0007165
Apr9g1172 1160 Gene3D - 338 421 IPR042197 -
Apr9g1172 1160 Gene3D - 179 334 IPR027417 -
Apr9g1172 1160 Gene3D - 16 178 IPR035897 -
Apr9g1172 1160 PRINTS Disease resistance protein signature 216 231 - -
Apr9g1172 1160 PRINTS Disease resistance protein signature 281 295 - -
Apr9g1172 1160 PRINTS Disease resistance protein signature 372 386 - -
Apr9g1172 1160 PRINTS Disease resistance protein signature 686 702 - -
Apr9g1172 1160 Pfam NB-ARC domain 202 418 IPR002182 GO:0043531
Apr9g1172 1160 SMART till_3 17 156 IPR000157 GO:0007165
Apr9g1172 1160 Pfam C-JID domain 945 1086 IPR045344 -
Apr9g1172 1160 Gene3D Ribonuclease Inhibitor 482 709 IPR032675 -
Apr9g1172 1160 Gene3D Ribonuclease Inhibitor 710 899 IPR032675 -
Apr9g1172 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 1112 IPR044974 GO:0006952
Apr9g1172 1160 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 1112 - -
Apr9g1172 1160 SUPERFAMILY L domain-like 527 871 - -
Apr9g1172 1160 Pfam Leucine Rich Repeat 597 616 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1172 Apr-Chr9 21145733 21151541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1172 13 842 WRKY Transcription Factor Family AT4G12020 33.607 1.10e-117 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1172 - - mtr:MTR_4g043630 1625.14