Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1142 ATGCCGAGTCACTCCGACTCACCCAACTCGCCCACCAACCCACTGAGTCAACTCGCTCAAAGCATGTTCTCCGACAATAACAACAGCAACATCATGCTTGCAGCCATCGTTTCCTTGCTCCTAGTCATTCTATTTGTCCTTCTACTCCACGTGTACGCCAAGTGGTTCTTGTTCCAAACACAATCACATTCACATGTTCGCCGCCGGCGAACTCCGGCGACCGTATCCGGCGTTCCGGAACCTTCCCACTTCCACAACATCAACATAGAAGACTTGCCCATCTGCACCAAAGGCCTCGACTCTGCAATAGTTTCAGCAATTCCCCTGTTTGTGCACGAAACAGAGAAAACGGAGGAATTGGAATGTGTCATTTGTTTGAGTGTTATTGAAGAGGGTGAAATTGGAAGAAGCTTGCCAAAGTGTGGCCACGCTTTTCACGTGGATTGCATTGACATGTGGTTGAGTTCACATTGCAATTGCCCAATTTGTAGAGCTCCTATTGTGATGAGTAACAATTCTCAATTGGGTTCTGTTGATGAAGATGGTGGTGGTGGTGATAATGATCATGCAGTGATTGAGATCGTGGTTGTTACTCCAGGTTATGATGAGATTACTGAGAGTGAGCGTGGGGATGATAGTTATGAAGGTGGTAGAGTGAGTGGTTCTGTTTCTGAAACTTCTTCATCTTTGATTGGTTGTTCTTTGAAGAGAATGCTAAGCAAGGTTTTTCTGTCTTCCGATGTAAGTGAATTAGATGGTTCAGAATGA 768 0.4544 MPSHSDSPNSPTNPLSQLAQSMFSDNNNSNIMLAAIVSLLLVILFVLLLHVYAKWFLFQTQSHSHVRRRRTPATVSGVPEPSHFHNINIEDLPICTKGLDSAIVSAIPLFVHETEKTEELECVICLSVIEEGEIGRSLPKCGHAFHVDCIDMWLSSHCNCPICRAPIVMSNNSQLGSVDEDGGGGDNDHAVIEIVVVTPGYDEITESERGDDSYEGGRVSGSVSETSSSLIGCSLKRMLSKVFLSSDVSELDGSE* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1142 255 CDD RING-H2_EL5_like 121 164 - -
Apr9g1142 255 Pfam Ring finger domain 121 164 IPR001841 -
Apr9g1142 255 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 248 IPR044675 -
Apr9g1142 255 SMART ring_2 122 163 IPR001841 -
Apr9g1142 255 PANTHER - 7 248 - -
Apr9g1142 255 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Apr9g1142 255 MobiDBLite consensus disorder prediction 205 224 - -
Apr9g1142 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 173 IPR013083 -
Apr9g1142 255 SUPERFAMILY RING/U-box 108 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1142 Apr-Chr9 20817415 20818429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1142 30 165 Rapid Response to Elicitors AT3G16720 39.568 1.09e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1142 - - aprc:113874423 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1810 10 31160964 31161801 Apr9g1142 9 20817415 20818429 PCT