Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1134 ATGGATATTGAGGATGTGAAGTGTCATGGGAATGGAAAACGTAAAAGAGGGTCAAAGAAAAGAAAACTTCTTGTCGATGAGAGAGTCGAGGTGAAGAGTGTGGAAGAGGGTTTTCTGGGTTCATGGCACCCGGGGACCGTGATCCGTTGTGGGAGGAAGAAACGTCATGTTAGATATGACAACATTTTGGATGATAAGGGTTTATATTATCTTGTTGATGTGGTGATTGTTTCATCTGTTTTGGATGATGTTAACAGTTCTTCAGATTGTTGCAATAGACGTGGCTTCATTAGACCAGTGCCTCCTCCATTTGAGTTTGGGGAAAATGACCTTCCATTTGCTCTTTGTGTTGATGTGAATTATCAAGATGCATGGTGGGAAGGTGTTATATTTGATCATTCTAATGGAATGAAGGAGAGGAGTGTGTTCTTCCCGGATTTGGGTGATGAAATAAAGGTTGGAACTGACCAACTACGGATAACTCAGGATTGGGATGAAGCTTCCGAGGAATGGGAGCCAAGAGGGAAGTGGGTGTTTCTTCAATTGATTGAGGAGTGTGAGAGGACATCCTATATTCCAGTTTCAGTGAAGCAGATATGGTATGATATAAGGGAAAGAAAGGATTTCGACAACATAAGGGACTGGACTTGTAAGGTGCAGGACTTGTGGAGAGAGCCTGTAATGGAGGTAATTGGTGACTACTATACTCTCACACTAGAACAAATTTTCCCAGCCTTAAATCTTCCAAAGGATTTCTTCAAAGAACCACCACAACTGGAGTCAGTTGAACCTACTGACAATGTTCATTGTGATGCTAGTAAGGATAATGTATTTGGTTCTGACATTGGAGTATCTGATTGCCCTATGGAAAATGGTGACTCCTCAAACTTGTTGGATAGTGATAAAAAATGTAATAGCATTATTCCTATTCAAGAGGAATATGATAAAAATACTTTGGTGGATGAGACATCTGAGAAGGAAATTCTGTTGCAGGAAGAACCTGTATCTTCAAATCAAGAGGTCTTGCCCGATGCTGGTAAAGTGATTCCAGGTGCTAGCTCTTGTGGAAAGAAGAGAAAACGTAGGGACCCAACATCCTTATGTTGGCATCCTCTGATAATGACTGAGGTTGAATTCTGTCCTGAAATTATTAACGAATATTTACTTGGATGTGGAAGCAAGACCATTAGAGATCTTTTGAAGACAAGAGTACGGAAACATCTAGCGTATGTTGGATGGAAGATTGAGTGGACTGACGATAAATATTTTCCTGGAAGAAAACGATTTAGGTACAAGTCACCTGATACACAGGATCAGAAGATTTATACTTCACTTGTTCAGGTTTTGACGGATATGCAAAAGGAGTCCAACATGAACTCTGTGCTGCCCCAAATTGATTACAATAGAATGCATTATACGAATGACAATAATATTTCACATCTGCTTTCAGATCAACCCCAAAATGACCACGATCTAGATGTTTGTCCTCCAAATGGGGCACCTTCTCCTAGTAAAGTTGTAGATGAACCTGAATTCTGTCCTCACGCTGTTGTGAAATACTACTTGAATGAATCAGATAACCATAGGGGTGAAAAAGGAAAATGGAAAATAAAAGCACAGAGGCATCTATTAGCAGAAGGATGGGTACTTGACTACCCAACTGAGAAAAGGAGGAGAACTTTGTACAGGTCTCCACAAAATCAGTGTTTGGGCTCACTTCGAGGTGCATGTAGACTATACATTAAAGAAAAAATTCCTGAATGGACTACTTCTGGCTTGACAACTTTGAATGTCCCAACCATGAATGAGGAAATTGTTGGTCATGTTGATAATGAATATCTATTGCAGAGTTTGTCGCAATTACTTCAAATAGAGCCTGAATTGCAGACAGTCAGTGGTTCACTGGCAAGTGGATCAACTGAGAATAGAAACCACAAACGCACCAGGAATTCAAAGGCAAGCATGCCAAAGCACCACAGGAAAGGATCACCTACACGAGTGCTGCGATCAAGCAAGAGGGTGCAGAAGGTGTCTGCTCCTAGTCTGATACACCAAAGACCTCAAAATGTCTTGTCTTGGTTAATAGATAGCAACATGGTGTTGCCAAGATGTAAGGTCTATTGCCGGGCAGGTGGTGGTAGGAACCCTGATTTTGTGGCTGAGGGGAGGATAACCCGTGAAGGAATCAAGTGTAGCTGTTGTAAGAAAATATATGGTCTTGGTGGCTTTGTACATCATGCTAGTGGCAGCAGTGACTGCAGGCCTTCTGCTAGTATCTTTTTGAGGGATGGTAGGTCACTCTTAGATTGCATGATACAAGTAATGCATGACTGCAGAACAAGGGAAACTATGGAGAAAGCATGCAATGATCATTGTGATGGCGAAAATGACAATGTTTGTTCTGTTTGTCAATATGGTGGTGAACTTATTTTATGTGACCAATGTCCATCCTCATTTCATAAGGAGTGTCTTGGTATGGCGGATATCCCTGATGGTGACTGGTTTTGTCCATCATGTCGTTGTGGGATTTGCAGCCAAATCAAAATGGAAGGGACAGAGCATGGACTTTTTCTTACTTGTGTTCAATGTGAACGTAAATATCACGATGGATGTCTTGAAGATAGAGGAAAAGATGAATCAAGAAAATATATGAAAAATTGGTTTTGCGGAAAAGAATGTGAACAGATATATGAAGGCCTCCAAAATCTAATAGGAAAGCCAATCACAGTGGGTGGGAATAATCTAACTTGGACATTAATGAAGTGTATCAACTCTGGGAGCTGTGATGTTGATAGTACCAAGAACGACTTATTGGCAGAGACTTACAGCAAACTCAATGTTGCACTTTCGGTGATGCATGAATGTTTTGAGCCCCTAGAGAATCCTTTCTCCGGCAGAGATATCATTGATGACGTCATATTTAATAATAGGTCAGAGCTTAAACGATTGAATTTCCAGGGTTTCTACTCCGTACTTCTGGAGAGAAATGAAGAATTGATCAGTGTAGCAACTATAAGGGTATTTGGACAAAAAGTAGCAGAGGTACCTCTTGTGGGTACCAGATTACAGTATCGTCGACTTGGAATGTGTCGCATTTTAATGGATGAGCTTGAGAAGAAGCTCATGCATCTGGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTCCTGGCGTGCTAGAAACCTGGACCAATTCTTTTGGCTTTGAGAAGATGACGATTTTTGAGAGATCACAATATGTGGACTATTCTTTCCTAGATTTTCAGGGAACCGTTATGTGCCAGAAGCTGTTGACAAGGATTCCATATCAGGATCCGGTTATAACAGAGACACCTACAAGACCACTTAGTGTTTACTCTGTTAAATGTAAAATTGAGTTTGAGAAGTCGAGTTCAGTATCTGAAGTGGACGACCAAGTTGAAGAAATTCACAACAATGGAATGATGGATCTACAAGTTGTGGAGTACGTCTCACCTATGCGTACTTCCTAA 3486 0.4102 MDIEDVKCHGNGKRKRGSKKRKLLVDERVEVKSVEEGFLGSWHPGTVIRCGRKKRHVRYDNILDDKGLYYLVDVVIVSSVLDDVNSSSDCCNRRGFIRPVPPPFEFGENDLPFALCVDVNYQDAWWEGVIFDHSNGMKERSVFFPDLGDEIKVGTDQLRITQDWDEASEEWEPRGKWVFLQLIEECERTSYIPVSVKQIWYDIRERKDFDNIRDWTCKVQDLWREPVMEVIGDYYTLTLEQIFPALNLPKDFFKEPPQLESVEPTDNVHCDASKDNVFGSDIGVSDCPMENGDSSNLLDSDKKCNSIIPIQEEYDKNTLVDETSEKEILLQEEPVSSNQEVLPDAGKVIPGASSCGKKRKRRDPTSLCWHPLIMTEVEFCPEIINEYLLGCGSKTIRDLLKTRVRKHLAYVGWKIEWTDDKYFPGRKRFRYKSPDTQDQKIYTSLVQVLTDMQKESNMNSVLPQIDYNRMHYTNDNNISHLLSDQPQNDHDLDVCPPNGAPSPSKVVDEPEFCPHAVVKYYLNESDNHRGEKGKWKIKAQRHLLAEGWVLDYPTEKRRRTLYRSPQNQCLGSLRGACRLYIKEKIPEWTTSGLTTLNVPTMNEEIVGHVDNEYLLQSLSQLLQIEPELQTVSGSLASGSTENRNHKRTRNSKASMPKHHRKGSPTRVLRSSKRVQKVSAPSLIHQRPQNVLSWLIDSNMVLPRCKVYCRAGGGRNPDFVAEGRITREGIKCSCCKKIYGLGGFVHHASGSSDCRPSASIFLRDGRSLLDCMIQVMHDCRTRETMEKACNDHCDGENDNVCSVCQYGGELILCDQCPSSFHKECLGMADIPDGDWFCPSCRCGICSQIKMEGTEHGLFLTCVQCERKYHDGCLEDRGKDESRKYMKNWFCGKECEQIYEGLQNLIGKPITVGGNNLTWTLMKCINSGSCDVDSTKNDLLAETYSKLNVALSVMHECFEPLENPFSGRDIIDDVIFNNRSELKRLNFQGFYSVLLERNEELISVATIRVFGQKVAEVPLVGTRLQYRRLGMCRILMDELEKKLMHLGVERLVLPAVPGVLETWTNSFGFEKMTIFERSQYVDYSFLDFQGTVMCQKLLTRIPYQDPVITETPTRPLSVYSVKCKIEFEKSSSVSEVDDQVEEIHNNGMMDLQVVEYVSPMRTS* 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1134 1161 Pfam Agenet domain 27 102 IPR008395 -
Apr9g1134 1161 CDD PHD2_CHD_II 799 839 - -
Apr9g1134 1161 SMART agenet_At_2 21 85 IPR014002 -
Apr9g1134 1161 SMART agenet_At_2 109 166 IPR014002 -
Apr9g1134 1161 Pfam Tify domain binding domain 722 773 IPR032308 -
Apr9g1134 1161 SUPERFAMILY FYVE/PHD zinc finger 794 845 IPR011011 -
Apr9g1134 1161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 841 IPR013083 -
Apr9g1134 1161 PANTHER PHD ZINC FINGER PROTEIN 10 1153 - -
Apr9g1134 1161 CDD NAT_SF 990 1051 - -
Apr9g1134 1161 MobiDBLite consensus disorder prediction 633 671 - -
Apr9g1134 1161 Gene3D - 925 1102 - -
Apr9g1134 1161 Pfam PHD-finger 799 841 IPR019787 -
Apr9g1134 1161 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 989 1080 IPR016181 -
Apr9g1134 1161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 842 897 IPR013083 -
Apr9g1134 1161 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 1153 - -
Apr9g1134 1161 MobiDBLite consensus disorder prediction 649 667 - -
Apr9g1134 1161 ProSiteProfiles Zinc finger PHD-type profile. 797 842 IPR019787 -
Apr9g1134 1161 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 935 1096 IPR000182 GO:0016407
Apr9g1134 1161 SMART PHD_3 799 840 IPR001965 -
Apr9g1134 1161 SMART PHD_3 841 893 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1134 Apr-Chr9 20692848 20698825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1134 32 1039 PHD Transcription Factor Family AT5G58610 36.505 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr9g1134 Agenet 2.2e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1134 - - gmx:102661511 1606.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1802 10 31057481 31063602 Apr9g1134 9 20692848 20698825 PCT