Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1124 ATGTTTGGTGCAATAGGGTTTGAACCTGTTCTCTCTTGTGATTTTTCAGATTCTATTGAGGCCTTAGGGGTACATATCTCCATGTGCGGTGTTTCCAAGAGGAAACCTTCTCAAACTGGTTTGGTGATGGAGGGTGAGTATGGAAAAGAAGAGTTGCATCATAAAATTTCTGCTTTGCTTGAATTTTCAGCTGCAGATGATGTAATTGGTTTCAAAGATGCGGTTGAAAAGAAGGGTTGTGATGTGGATGAGGTAGGCTTGTGGTACGGAAGGCGTGTTGGCTCAAAGAAAATAGGTTATGAAGAGAGGACACCTCTCATGATTGCTGCTATGTTTGGAAGCCTTGGTGTGTCAAATTATATTCTTGAAACAGGTCATGTTGATGTTAACCGGGCTAGTGGTTCAGATGGAGCCACTGCTCTTCATTGTGCGGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGGTTGCCAAGCTTTTGCTTGATGCATCTGCTGATGCCAGTGCTGTTGATGCCAATGGTAATCGACCCCTTGACTTGATTGTTTCTGTGGCTAATTCTATGTTCACTCCTAGGACAAGGATGGTACAAGCTCTACTGGAGGGTACAGGTGGTGCTGATCAGGCATGTCTTGCACTTCCAGAAGTGATTGATCGAATTGAGGAACAAAGACAATATATTAGCACACCTCGTGTTTCTGAGAAGAAAGATTATCCTGTTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATAGTACTGACGAATTTAGGATGTATTCATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGGCGTGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGTCCTGAATTTCGGAAGGGATCTTGTAGCAAGGGTGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAATATCGTACACGGCTTTGCAAGGATGAAAGTGGATGCACACGCAGGGTTTGCTTCTTTGCTCACAAGCCTGAGGAGCTGCGCCCCTTGTATGCTTCTACAGGTTCTGCTATTCCTTCTCCTAGATCATATTCTGCTAGTGCTTCTGTGTTGGAGATGGGTTCAGTTAGCCCAATTGCACTTGGTTCTCCATCTGTATTGATACCTCCTTCCTCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCTGTTGCTGGAGCCATGTGGTCTCAATGTAATGTTTCGGTTCCTACACTGCAGCTGCCCAAAAGCAGATTGAAGTCTGCATCAACTGCTAGAGATATTGATTTAGATATGGAAATGCTTGGACGAGAAACTCATCGACGCAGACAACAACTAATGATGGATGAGATATCTGGTGTTTCCTCTCCTTCCAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTTCCGTTTCTTTGGGCGATCATTCTGGTGAATTAAATAGGCTTTCGGGGGTGAAGCCTACTAACCTTGAAGACATCTTTGGATCTCTCGATCCATCAATGTTGCAGAAATTCCATGGAATCTCGCTTGATGTTGCAGGATCTCAGTTACAATCTCCAACCGGAATCCAGATGCGTCAAAGTGTGAACCAGCAGCTAGGAAGCTATTCTTCTGGCCTTTCCACTTCAAATGTGATTGGATCGCGGTCCTTTAGAATTGATCCATCTGGGGATGCAGCCACAGTGGCTTTGAATCCAAGAGCTGCTGCCTTTGCAAAGCGGAGCCAAAGCTTTATTGAGCGTAGTGTGGTGAACCATCATTCTGAGCTTCCTTCTCCTGCTACCTCTGTAGCTGCAAAGCCTTCTACCTTCTCTGATTGGGGCTCCCCTGATGGAAAATTAGATTGGACCATAAATGGAGAAGAGCTGAATAAGCTGAGGAAGTGTGCTTCTTTTGGATTTCGTAACGGCAATAGTCCTTTAACCATGGCTAAAACCAAAGTGCCTGCAAATGTTGACGAGCCAGATGTCTCTTGGGTTCACTCACTTGTGAAGGATGCTCCACTGGAATCTGGTGAGTACGGTGTTGAAGATCAGCAAAAACAACTGCAGTGCCACCTTAACAATGGAACAGATGCGATTCCAGCATGGTTGGAGCAAATGTACATTGAGCAGGAGCAAATGGTGGCGTGA 2190 0.4521 MFGAIGFEPVLSCDFSDSIEALGVHISMCGVSKRKPSQTGLVMEGEYGKEELHHKISALLEFSAADDVIGFKDAVEKKGCDVDEVGLWYGRRVGSKKIGYEERTPLMIAAMFGSLGVSNYILETGHVDVNRASGSDGATALHCAVAGGSAASVEVAKLLLDASADASAVDANGNRPLDLIVSVANSMFTPRTRMVQALLEGTGGADQACLALPEVIDRIEEQRQYISTPRVSEKKDYPVDLSLPDIKNGIYSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSASASVLEMGSVSPIALGSPSVLIPPSSTPPLTPSGASSPVAGAMWSQCNVSVPTLQLPKSRLKSASTARDIDLDMEMLGRETHRRRQQLMMDEISGVSSPSNWKNSMPNSPSFSVSLGDHSGELNRLSGVKPTNLEDIFGSLDPSMLQKFHGISLDVAGSQLQSPTGIQMRQSVNQQLGSYSSGLSTSNVIGSRSFRIDPSGDAATVALNPRAAAFAKRSQSFIERSVVNHHSELPSPATSVAAKPSTFSDWGSPDGKLDWTINGEELNKLRKCASFGFRNGNSPLTMAKTKVPANVDEPDVSWVHSLVKDAPLESGEYGVEDQQKQLQCHLNNGTDAIPAWLEQMYIEQEQMVA* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1124 729 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 48 728 - -
Apr9g1124 729 ProSiteProfiles Ankyrin repeat profile. 136 171 IPR002110 GO:0005515
Apr9g1124 729 ProSiteProfiles Zinc finger C3H1-type profile. 300 322 IPR000571 GO:0046872
Apr9g1124 729 SMART c3hfinal6 295 321 IPR000571 GO:0046872
Apr9g1124 729 SMART c3hfinal6 330 353 IPR000571 GO:0046872
Apr9g1124 729 Gene3D - 296 358 - -
Apr9g1124 729 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 320 IPR000571 GO:0046872
Apr9g1124 729 ProSiteProfiles Ankyrin repeat region circular profile. 136 170 - -
Apr9g1124 729 Pfam Ankyrin repeats (3 copies) 94 167 IPR002110 GO:0005515
Apr9g1124 729 Gene3D - 39 217 IPR036770 -
Apr9g1124 729 SUPERFAMILY Ankyrin repeat 77 198 IPR036770 -
Apr9g1124 729 SMART ANK_2a 101 131 IPR002110 GO:0005515
Apr9g1124 729 SMART ANK_2a 136 168 IPR002110 GO:0005515
Apr9g1124 729 PANTHER UNKEMPT FAMILY MEMBER 48 728 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1124 Apr-Chr9 20619001 20622463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1124 28 724 C2H2 Transcription Factor Family AT5G12850 37.824 1.00e-144 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr9g1124 Ank_2 3.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1124 - - aprc:113846970 1434.85