Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1114 ATGGACCACGTTAATAAGTATAAGAAGAAGGAGGAGGAAGACGAAGAGACAGCGCGTCAGAAAAGGGAGGCGCGTGGTGTTTGTCGTGCTTTTCAAAGAGGTGAATGTACTCGTGGAGCTAGCTGCAAATTTTCTCATGATGAACAAAGAGCTGCAAATACAGGTTGGGGTCAAGAGGAAGACAGTTCAAAATGGGGTCATGACAAATATGAGGGTCCCAAAAAAGAGAGAAAATATGGCAGCAACCCATCAAATCATTTTCCAGAAACAATGGAGAGCGATTCACATTCTAGAGCCCATGGGCATGACGTTGGATTAGACAGCCAACCAAAGAGAAGTGATAGAAGAGAGAAGACATTGCGGCAGCATGATGATGATGATAGATGTGAGGGAAGAGAAAATAACAGTAGAAGAGAAGAAAAGAGATCAAAAAGGCATGAAGATGACAAATTTGAACACAGGTCAAGAGAAGAACGATATAGGAGGGAAGAAAAAAGACCAAGAAGGAATGATTATAAAGGTATGGAACCTGAGCCAAAAGATCATAACAGAGGGGAAGGCAAGAGATCAATAAAGCCAGATGATACTGAGTTTGAACACAAGTCCAGAGGTTCTGATATAACTATTAAGGGATGA 636 0.4167 MDHVNKYKKKEEEDEETARQKREARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGQEEDSSKWGHDKYEGPKKERKYGSNPSNHFPETMESDSHSRAHGHDVGLDSQPKRSDRREKTLRQHDDDDRCEGRENNSRREEKRSKRHEDDKFEHRSREERYRREEKRPRRNDYKGMEPEPKDHNRGEGKRSIKPDDTEFEHKSRGSDITIKG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1114 211 MobiDBLite consensus disorder prediction 1 211 - -
Apr9g1114 211 ProSiteProfiles Zinc finger C3H1-type profile. 22 49 IPR000571 GO:0046872
Apr9g1114 211 Gene3D - 7 101 - -
Apr9g1114 211 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 2 173 - -
Apr9g1114 211 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 2 173 - -
Apr9g1114 211 MobiDBLite consensus disorder prediction 91 211 - -
Apr9g1114 211 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 47 IPR000571 GO:0046872
Apr9g1114 211 MobiDBLite consensus disorder prediction 61 82 - -
Apr9g1114 211 SUPERFAMILY CCCH zinc finger 25 47 IPR036855 GO:0046872
Apr9g1114 211 SMART c3hfinal6 24 48 IPR000571 GO:0046872
Apr9g1114 211 Coils Coil 4 24 - -
Apr9g1114 211 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1114 Apr-Chr9 20494351 20497369 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr9g1114 zf-CCCH 5.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1114 K13107 - gmx:100792988 230.72