Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1113 ATGGCCGAACGTGGTGGCGGAGACCGTGGGGGTTTTGGCCGTGGCTTCGGCGGACGCGGTCGCGGTCGCGGTGACAGGGGTCGCGGTGGTCGCCGCAGAGCCTCAGGGCGCCGTGACGAAGAGGAGAAGTGGGTCCCAGTGACAAAGCTTGGTCGCCTCGTGAAAGAGGGAAAAATCCGAAGCCTGGAGCAGATCTACCTCCATTCTCTGCCAATCAAGGAACACCAAATCGTTGACACCTTGGTTGGCCCCTCCCTCAAAGACGAGGTCATGAAAATCATGCCGGTTCAGAAACAAACCCGGGCCGGTCAACGTACCCGGTTCAAGGCCTTCGTTGTCGTTGGTGACGGTAATGGCCACGTTGGTCTTGGTGTTAAGTGCAGCAAAGAAGTTGCCACCGCTATTCGCGGTGCCATCATCTTGGCTAAGCTCTCTGTTATTCCTGTTAGGAGAGGCTACTGGGGAAACAAGATCGGAAAGCCTCACACCGTTCCCTGCAAGGTTACCGGAAAGTGCGGTTCCGTCACCGTCCGCATGGTTCCTGCTCCTCGTGGTTCTGGAATTGTCGCTGCTAGGGTTCCTAAGAAGGTTTTGCAGTTTGCTGGAATTGAAGATGTCTTTACTTCCTCCAGAGGATCTACCAAGACTCTTGGAAATTTCGTCAAGGCTACTTTTGAGTGTCTTCTGAAAACTTACGGTTTTCTGACCCCTGATTTCTGGAGGGAGACTCGCTTCTCCAAATCTCCATTCCAAGAGTACACCGATTTGTTGGCAAAGCCAACAGGAAAGGCTTTGATCCTGGAGGAGGAAAGGGTGGAGGCTTAA 825 0.5382 MAERGGGDRGGFGRGFGGRGRGRGDRGRGGRRRASGRRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFSKSPFQEYTDLLAKPTGKALILEEERVEA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1113 274 ProSiteProfiles S5 double stranded RNA-binding domain profile. 86 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Apr9g1113 274 MobiDBLite consensus disorder prediction 1 41 - -
Apr9g1113 274 SUPERFAMILY dsRNA-binding domain-like 82 151 - -
Apr9g1113 274 Pfam Ribosomal protein S5, N-terminal domain 86 150 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Apr9g1113 274 PANTHER RIBOSOMAL S SUBUNIT 1 272 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Apr9g1113 274 Pfam Ribosomal protein S5, C-terminal domain 170 241 IPR005324 GO:0003735|GO:0005840|GO:0006412
Apr9g1113 274 TIGRFAM uS5_euk_arch: ribosomal protein uS5 39 246 IPR005711 GO:0003735|GO:0006412|GO:0015935
Apr9g1113 274 Gene3D - 43 148 - -
Apr9g1113 274 ProSitePatterns Ribosomal protein S5 signature. 103 135 IPR018192 -
Apr9g1113 274 SUPERFAMILY Ribosomal protein S5 domain 2-like 162 242 IPR020568 -
Apr9g1113 274 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 272 - -
Apr9g1113 274 Gene3D - 149 241 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1113 Apr-Chr9 20491572 20493322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1113 40 262 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.135 6.79e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1113 K02981 - gmx:100797105 476.478