Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1110 ATGAACCCATTAACCCTAGTGAAGCGCATTCAGAACATCAATTCCAGAGAAGCTGCACTCGGCATCGGCGAAGAAGCTTCGTGGCACACCAAATACAAAGATTCCGCTTACATTTTTGTCGGTGGCATTCCCTTCGATCTCACCGAGGGTGATCTTCTCGCTGTTTTTGCTCAATACGGTGAGGTTGTTGATGTTAATCTCGTTAGAGACAAAGGCACTGGAAAATCAAAGGGTTTTGCGTTCCTTGCGTATGAAGATCAAAGAAGCACAACTCTTGCTGTGGATAATTTGAATGGAGCTCAGGTTTTAGGGAGAGTAATTAGGGTGGACCACGTTAATAAGTATAAGAAGAAGGAGGAGGAAGACGAAGAGACAGCGCGTCAGAAAAGGGAGGCGCGCGGTGTTTGTCGTGCTTTTCAAAGAGGAGAATGTACTCGTGGAGCTAGCTGCAAATTTTCTCATGATGAACAAAGAGCTGCAAATACAGGTTGGGGTCAAGAGGAAGACAGTTCAAAATGGGGTCATGACAAATATGAGGGTCCCAAAAAAGAGAGAAAATATGGCAGCAACCCATCAAATCTTTTTCCAGAAACTAGAGACAGCGATTCACATTCTAGAGCCCATGGGCATGACATTGGATTAGACAGCCAACCAAAGAAAAGTGATAGAAGAGAGAAGACATTGCGGCAGCATTATGACGATGATAGATGTGAGGGAAGAGAAAATAACAGTAGAAGAGAAGAAAAGAGATCAAGAAGGCATGAAGGTGACAAATTTGAACACAGGTCGAGAGAAGAGCAATATAGGAGGGAAGAAAAAAGATCAAGAAGGAATGATTATAATGGTATGGAACCTGAGTCAAAAGATCATAACAGAGGGGAAGGCAAGAGATCAATAAAGCCAGATGATACTGAGTTTGAACACAAGTCAAGAGGTTCTGATATAACTATAAGGGATGATCAAAGACCCTGGAGGCAGGATGATGATGATTTTGGAAGGAAATCAAGAGAACCTCATAGTAACAGGGAAGACAGGAGATCACGAAAGCACCCTGAAGATGAATGTGCACCAAGGTCAAGAGAAGATTATGATAGGAAACAAGATAACAGATCATATATAAATGATAGTGATCGAAGAGAGTCAAAAGTAAGATATGATTTTGACAGGAGAGGAGAGAAAAGTTCAAGAAGGTAA 1194 0.4196 MNPLTLVKRIQNINSREAALGIGEEASWHTKYKDSAYIFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTTLAVDNLNGAQVLGRVIRVDHVNKYKKKEEEDEETARQKREARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGQEEDSSKWGHDKYEGPKKERKYGSNPSNLFPETRDSDSHSRAHGHDIGLDSQPKKSDRREKTLRQHYDDDRCEGRENNSRREEKRSRRHEGDKFEHRSREEQYRREEKRSRRNDYNGMEPESKDHNRGEGKRSIKPDDTEFEHKSRGSDITIRDDQRPWRQDDDDFGRKSREPHSNREDRRSRKHPEDECAPRSREDYDRKQDNRSYINDSDRRESKVRYDFDRRGEKSSRR* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1110 397 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Apr9g1110 397 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 281 - -
Apr9g1110 397 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Apr9g1110 397 MobiDBLite consensus disorder prediction 161 397 - -
Apr9g1110 397 MobiDBLite consensus disorder prediction 169 186 - -
Apr9g1110 397 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 281 - -
Apr9g1110 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Apr9g1110 397 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Apr9g1110 397 Gene3D - 133 245 - -
Apr9g1110 397 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Apr9g1110 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Apr9g1110 397 MobiDBLite consensus disorder prediction 199 397 - -
Apr9g1110 397 Coils Coil 112 132 - -
Apr9g1110 397 SMART rrm1_1 37 110 IPR000504 GO:0003723
Apr9g1110 397 Gene3D - 26 132 IPR012677 -
Apr9g1110 397 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Apr9g1110 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1110 Apr-Chr9 20473926 20477801 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1110 38 111 Eukaryotic Initiation Factors Gene Family AT4G34110 31.081 6.52e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1110 K13107 - gmx:100792988 493.041