Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1104 ATGGTAAGAGAGGAAAACAATGCAAATTATAACCTTTCTGTTACGTATCGATCAAGCCCTCCTTTGACAGCCATAGAAAGGTTCTTAAGGGGCCAACATAGCCATTTTCCTCACCAGCAACAACAACCACAAAATGTTGCAAGGAACAATGATGCAAGTGTTTTTACTGAGGAGTTGTGCAGTTTTTCTTCCTCTGATGGATCGAACAGTAGTTTTTTGTGGCCAAACAGTACACAAGAGTGCTTTGTTGATGGGCTCACAGCAAATGAAGAGGCTTTGATGTGGAATAACATCAACCAAAGCCCCACATTGTGCCTGAAAGATATGAGACTTTTAGGTAAGAAAGCAAGAGTGGTGGGAAAGAGAAGTAAGAAAGAGTCTTCTGTGTTTTGGATCAAAGGACAGTGGACTGAAGAAGAAGACAGGAAACTGATAAGGTTGGTGAAACAATATGGTGATCAAAGAAAATGGACTGAAATAGCTGAGAAGTTGGAGGGAAGGATTGGCAAGCAATGTCGAGAAAGATGGCACAATCATTTGCGTCCTGATATCAAGAAGGATAGTTGGAGTGAAGAAGAAGAGAGGATATTAGTAGATACGCATGCCAGGGTCGGAAATCGTTGGGCTGAGATAGCCAAAAAGATTCCAGGAAGAACAGAAAATGCCATAAAGAACCATTGGAATGCCACTAAAAGGAGACAGAATTCAAAGAGAAAGAACAGGAAGATGCACAGCTCTAATACAAAGCCAAATTCCTCTATACTTGAAGACTACATCAGAAGCCAGACTCTAATTGGCACTACTTGCATCAACCCAACACAAGGCATCATCACTGATACAACTATCTTAGAAGACCCTGATGCAAAAAGTTTAAACCTTGTGTTCTCTGAACCCTCTGAATCTCTTGCCAATGAGCTACCCTTCATGCAACAAATTTTCACTGAGAATCAGAATCAGCAATCACTTGGCAATGTTGAACTTGAAGATTCTATGTTCTCCATGGTTTCTCCAACCTGCGACTTGGATTTTTGTCAAGGAAAGGTTAATGATGATGCTAATAATCTCCAGCATTTAGAGGCTCATCCTACCCCCTTAAATTACCATCCTTCGGATCTATATATCTATCACTTGTTCAACGTAGCAACCGGTTATGGGAATCAAAGCCTAAACATAGATTTTCACCAAGAGAATCAATATTGTTCAGAAGGAAAAAGAGAGATGGATTTAATAGAGATTATTTCTTCTTCTTCTTAG 1254 0.4003 MVREENNANYNLSVTYRSSPPLTAIERFLRGQHSHFPHQQQQPQNVARNNDASVFTEELCSFSSSDGSNSSFLWPNSTQECFVDGLTANEEALMWNNINQSPTLCLKDMRLLGKKARVVGKRSKKESSVFWIKGQWTEEEDRKLIRLVKQYGDQRKWTEIAEKLEGRIGKQCRERWHNHLRPDIKKDSWSEEEERILVDTHARVGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSKRKNRKMHSSNTKPNSSILEDYIRSQTLIGTTCINPTQGIITDTTILEDPDAKSLNLVFSEPSESLANELPFMQQIFTENQNQQSLGNVELEDSMFSMVSPTCDLDFCQGKVNDDANNLQHLEAHPTPLNYHPSDLYIYHLFNVATGYGNQSLNIDFHQENQYCSEGKREMDLIEIISSSS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1104 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 235 IPR017930 -
Apr9g1104 417 ProSiteProfiles Myb-like domain profile. 181 231 IPR001005 -
Apr9g1104 417 PANTHER MYB TRANSCRIPTION FACTOR 39 393 - -
Apr9g1104 417 SMART sant 132 182 IPR001005 -
Apr9g1104 417 SMART sant 185 233 IPR001005 -
Apr9g1104 417 CDD SANT 136 180 IPR001005 -
Apr9g1104 417 Gene3D - 187 256 - -
Apr9g1104 417 PANTHER MYB PROTEIN-RELATED 39 393 - -
Apr9g1104 417 Pfam Myb-like DNA-binding domain 136 194 - -
Apr9g1104 417 CDD SANT 188 231 IPR001005 -
Apr9g1104 417 ProSiteProfiles Myb-like domain profile. 133 180 IPR001005 -
Apr9g1104 417 Gene3D - 132 185 - -
Apr9g1104 417 MobiDBLite consensus disorder prediction 229 253 - -
Apr9g1104 417 SUPERFAMILY Homeodomain-like 132 227 IPR009057 -
Apr9g1104 417 MobiDBLite consensus disorder prediction 230 245 - -
Apr9g1104 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 184 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1104 Apr-Chr9 20441719 20443874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1104 14 416 MYB Transcription Factor Family AT5G58850 37.668 5.26e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g1104 Myb_DNA-bind_6 5.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1104 K09422 - aprc:113874412 829.32