Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1098 ATGAAGTGGGAAATGGTAACCCTCTCTCCTGCACCTTGTACTTCTTCCAACTCCAACTCCAACTCCAATTGGATTGTGGAAGATAACAGGTGCACAAAATGGACCCACGAAGAGAACAAACTGTTTGAAAATGCTCTTGCAGTGCATGATAAGGACACACCCGATCGGTGGCACAAAGTCGCTGAAATGATTCCAGGGAAGACAGAAGTTGACGTTATCAGACAGTATAAGAAGTTAGAGGTAGATGTTAGCAATATAGAAGCTGGGTTGATCCCGGTTCCTGGATATAGTACTGCTACCTCACCCTTCACCTTGGACTGGGTCAACACTCCTGGTTACGATGGATTCAAAGGAAGTGGAAAGAGATCTTCCTCAGTTAGACCTCCTGAACAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAACATAAATTGTTTCTACTGGGTTTGAAGAAGTATGGAAAAGGTGATTGGAGAAATATTTCACGCAATTTTGTTATTACTAGAACTCCAACTCAAGTGGCTAGCCATGCTCAGAAATACTTCATAAGACAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGTATCCATGACATAACAACAGTGAATCTTGCAGAAACCAGCACAACTTCTTCAGAAGACACCAATAGATCCACTTCACCACAAATGCTCTCACAGCAGCACCCAAATTCGACTGCCACTACACATTTTCATTGGAATAATGAGTCAAACACAGGAGTAGCTATGACCCTCAATCCTTCACATGAAAGAGTTTTCATGTCTCCTTATGGTGCTAACTCCTATGGGGTTAAAATGCAGGGACAAAATATGCACAAGAGTGCTCTTCATGAGTCGTCTTACTTGGCACCTCAGACACAGAACATTATTTTCCAAATGCAACAGTCCTCACAACACTAA 924 0.4286 MKWEMVTLSPAPCTSSNSNSNSNWIVEDNRCTKWTHEENKLFENALAVHDKDTPDRWHKVAEMIPGKTEVDVIRQYKKLEVDVSNIEAGLIPVPGYSTATSPFTLDWVNTPGYDGFKGSGKRSSSVRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLAETSTTSSEDTNRSTSPQMLSQQHPNSTATTHFHWNNESNTGVAMTLNPSHERVFMSPYGANSYGVKMQGQNMHKSALHESSYLAPQTQNIIFQMQQSSQH* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1098 307 SMART sant 135 185 IPR001005 -
Apr9g1098 307 SMART sant 30 82 IPR001005 -
Apr9g1098 307 CDD SANT 33 79 IPR001005 -
Apr9g1098 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Apr9g1098 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 283 IPR043363 -
Apr9g1098 307 MobiDBLite consensus disorder prediction 207 241 - -
Apr9g1098 307 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Apr9g1098 307 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Apr9g1098 307 ProSiteProfiles SANT domain profile. 29 84 IPR017884 -
Apr9g1098 307 ProSiteProfiles Myb-like domain profile. 26 80 IPR001005 -
Apr9g1098 307 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Apr9g1098 307 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Apr9g1098 307 CDD SANT 138 183 IPR001005 -
Apr9g1098 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Apr9g1098 307 Gene3D - 137 187 - -
Apr9g1098 307 SUPERFAMILY Homeodomain-like 33 85 IPR009057 -
Apr9g1098 307 MobiDBLite consensus disorder prediction 1 21 - -
Apr9g1098 307 Gene3D - 25 93 - -
Apr9g1098 307 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 283 - -
Apr9g1098 307 SUPERFAMILY Homeodomain-like 132 186 IPR009057 -
Apr9g1098 307 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1098 Apr-Chr9 20384855 20387336 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g1098 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1098 - - gmx:778034 503.056