Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1086 ATGGGTTACTTGTGTGATTTCTGTGGAGACCAGAGGTCCTTGGTGTACTGCCGCTCTGATGCCGCATGCTTATGTTTGTCATGTGATCGAAACGTTCATTCTGCTAATGCCCTTTCTAGGCGTCATTCAAGAACACTTGTATGTGAGAGGTGTAATTCACAACCTGCATTTGTGAGGTGTGTTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCTCACCAACTTCTTCAGCACACAAGAGGCAAACAATCAATTGCTATTCCGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCCTAGATATTCCCTCTATGGGTGAAGCGTGTGAGCAGGAACTAGGTTTAATGAGCATTAATGAAAACAGCAACAAGAATTGGGTTCCTCCAGAAGGCCAGAATGTGTCTGGTTCAGCTCAAGTGACTGATCTACCTAGCAAGGATAAATCTTGGGTTGGCACATCTTCAATACCCGAATCAGGACCCCTTGTTCTGAACCAGCCATCTGGACCTGCCAATGAATCTATGCCCAAGTTGTACTGTCCTGGTAAGAAAGTTTCTGGACTCTGTGATGATGATAAGCTGTATGATGATTTCATCATGGATGAAGTGGATCTAGAACTTGAAAACTATGAGGAACTTTTTGGTATGGCTATGAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTATTTGGGACGAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGATCATCTGCTGGGTTGGTAAATGCCATGCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCAATGTTGAGTACAAAAACTGAACCAATTCTTTGTTTTACGGCAAGGCAATCACAATCAAACATTTCTTTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCATGCCCTGAGAGCTCTCTGCAATCTGCTAACCGTAGCAATGCTGTCATGCGTTATAAGGAAAAGAAGAAGACCAGAAAGTTTGAGAAGAGAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAGGCGTGTGAAGGGCCGGTTTGTGAAAGCTGGTGATGTTTATGACTATGACCCTCTGCACCAAACCAGAAGCTACTGA 1227 0.4466 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSPTSSAHKRQTINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENSNKNWVPPEGQNVSGSAQVTDLPSKDKSWVGTSSIPESGPLVLNQPSGPANESMPKLYCPGKKVSGLCDDDKLYDDFIMDEVDLELENYEELFGMAMSHSEELFENGGIDSLFGTKDMSASAGDSHCQGAVAAEGSSAGLVNAMQPACSNAASADSMLSTKTEPILCFTARQSQSNISFSGVTKDSAGDYQDCGASSMLLMGEPPWCPPCPESSLQSANRSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGDVYDYDPLHQTRSY* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1086 408 CDD Bbox1_BBX-like 4 47 - -
Apr9g1086 408 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515
Apr9g1086 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Apr9g1086 408 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr9g1086 408 CDD Bbox1_BBX-like 47 90 - -
Apr9g1086 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
Apr9g1086 408 Pfam CCT motif 351 393 IPR010402 GO:0005515
Apr9g1086 408 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Apr9g1086 408 SMART bboxneu5 4 47 IPR000315 GO:0008270
Apr9g1086 408 SMART bboxneu5 48 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1086 Apr-Chr9 20298579 20304915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1086 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 56.132 2.31e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr9g1086 CCT 6.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1086 - - gmx:100783016 741.88