Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1085 ATGGGCCTCTCAAGTCTCCCAGCACCATCTGAAGGAGTATTATGTGTACTTCTTGTGAACACTGTATTGTCAATTTCCATATTTAAAGGCATTGTTAGGACAATCTTACACATTGTTGGTATCCATCTTTCATCATCCTCCACTTCACCAGATGCCTCTCAAACCCCGCCCGAGTCATTCGAATTCCATCTTAGTCCCTCTGAGAGTTACATTGAAGAGTTCAGAAGCAGGACACCAACACTAAGGTTTGACACAGTGTATAGCTGTAAACGACCTGAACATGACTGCTCTGTATGTCTTACTCAGTTTGAACCAGAATCGGAGATAAACCGATTGTCTTGTGGCCATCTCTTCCATACAGTATGCTTGGAGAAGTGGCTGGACTATTGGAACATTACATGCCCTCTTTGCAGGACTCCCTTAATGCCTGAAGATGATACACCTTGCTTTTAG 453 0.4349 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSTSPDASQTPPESFEFHLSPSESYIEEFRSRTPTLRFDTVYSCKRPEHDCSVCLTQFEPESEINRLSCGHLFHTVCLEKWLDYWNITCPLCRTPLMPEDDTPCF* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1085 150 Pfam Ring finger domain 95 138 IPR001841 -
Apr9g1085 150 PANTHER - 1 146 IPR044249 -
Apr9g1085 150 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Apr9g1085 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 146 - -
Apr9g1085 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 143 IPR013083 -
Apr9g1085 150 SMART ring_2 96 137 IPR001841 -
Apr9g1085 150 SUPERFAMILY RING/U-box 95 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1085 Apr-Chr9 20294836 20296584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1085 1 145 C3H Transcription Factor Family AT2G04240 62.987 6.37e-59 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1085 K16285 - gmx:100786803 287.345