Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1082 ATGGGAGAGGGAGAGAACTTGGAAGTAGAAACAGAGACAGAAACAGAAGCAGAAGGAACATCAACATGGAACCTCGGAAAACATAGGCAGATACTGGAGTTATCGGAGAAGCTCATGAATGGAAACCTCAACACAAAGATTGAAGCTGCCAGAGAAATCAGGAAGCTCGTTCGCAAATCATCGTCATCATCCAAAACACGTTTGAAACTTGCCGCCGCGGGTGTGATTCAACCACTCGTCTTCATGCTCTCTTCTTCCGACCTCGACGCTCGTCAATCCTCTCTCCTCGCTCTTCTCAACCTCGCTGTTCGCAATGAACGAAACAAAGTCAAAATAGTGACAGCTGGTGCCATGCCTCCTCTGGTGGAGCTCCTTAAGATGCAAAATAGTAGTATAAGAGAATTAGCTACAGCTGCAATCTTGACACTCTCAGCTGCTGCACCCAACAAGCCAATTATTGCTACTTCTGGAGCTGCACCTCTCCTTGTTCAGACTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGACGCCGTTACAGCCCTCCATAATCTTTCCACTAGCATTGGGAATTCCACTGAACTTCTTGATGCAAGTGCTGTTTTCCCTCTGATCAACCTCCTTAAAGAGTGCAAGAAGTATTCTAAGTTTGCAGAAAAAGCCACAGCACTACTTGAAATCCTTTCCAACTCTGAAGAGGGACGAAATGCAATCACAATTGCTGATGGTGGAATCTTAACCCTAGTAGAGACAGTTGAAGATGGATCCCTAGTCAGCACAGAGCATGCTGTTGGAACTTTGCTATCATTATGTCTAAGCTGCCGAGATAAGTACCGGGAACTGATTCTTAAAGAAGGAGCAATTCCAGGTCTGTTACGACTAACAGTGGAGGGCACAGCTGAAGCTCAAGATAGAGCACGCACGCTTCTGGATTTGCTCAGAGATTCTCCCCCTGAAAAAAGACTAACCTCCTCAGTGCTGGAGAAAATTGTTTATGACATTGCTGAAAGGGTAGATGGAGTAGATAAAGCTGCTGAAACTGCCAAACGTTTGTTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAACTGCATCCAGCATAGGGCTGCATCTTGTACTCCTTCTGTGATTCCATCCACTTGA 1146 0.4546 MGEGENLEVETETETEAEGTSTWNLGKHRQILELSEKLMNGNLNTKIEAAREIRKLVRKSSSSSKTRLKLAAAGVIQPLVFMLSSSDLDARQSSLLALLNLAVRNERNKVKIVTAGAMPPLVELLKMQNSSIRELATAAILTLSAAAPNKPIIATSGAAPLLVQTLKSGSVQGKVDAVTALHNLSTSIGNSTELLDASAVFPLINLLKECKKYSKFAEKATALLEILSNSEEGRNAITIADGGILTLVETVEDGSLVSTEHAVGTLLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARTLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEHSMNCIQHRAASCTPSVIPST* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1082 381 SMART arm_5 104 145 IPR000225 GO:0005515
Apr9g1082 381 SMART arm_5 146 186 IPR000225 GO:0005515
Apr9g1082 381 SMART arm_5 230 271 IPR000225 GO:0005515
Apr9g1082 381 SMART arm_5 63 103 IPR000225 GO:0005515
Apr9g1082 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 242 IPR000225 GO:0005515
Apr9g1082 381 MobiDBLite consensus disorder prediction 1 15 - -
Apr9g1082 381 Gene3D - 21 377 IPR011989 -
Apr9g1082 381 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 20 347 - -
Apr9g1082 381 PANTHER U BOX DOMAIN-CONTAINING 20 347 - -
Apr9g1082 381 MobiDBLite consensus disorder prediction 1 21 - -
Apr9g1082 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Apr9g1082 381 Pfam Armadillo/beta-catenin-like repeat 105 144 IPR000225 GO:0005515
Apr9g1082 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 158 IPR000225 GO:0005515
Apr9g1082 381 SUPERFAMILY ARM repeat 34 331 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1082 Apr-Chr9 20267790 20273035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1082 1 314 U-box Gene Family AT3G54790 36.308 2.51e-40 150