LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g1082	ATGGGAGAGGGAGAGAACTTGGAAGTAGAAACAGAGACAGAAACAGAAGCAGAAGGAACATCAACATGGAACCTCGGAAAACATAGGCAGATACTGGAGTTATCGGAGAAGCTCATGAATGGAAACCTCAACACAAAGATTGAAGCTGCCAGAGAAATCAGGAAGCTCGTTCGCAAATCATCGTCATCATCCAAAACACGTTTGAAACTTGCCGCCGCGGGTGTGATTCAACCACTCGTCTTCATGCTCTCTTCTTCCGACCTCGACGCTCGTCAATCCTCTCTCCTCGCTCTTCTCAACCTCGCTGTTCGCAATGAACGAAACAAAGTCAAAATAGTGACAGCTGGTGCCATGCCTCCTCTGGTGGAGCTCCTTAAGATGCAAAATAGTAGTATAAGAGAATTAGCTACAGCTGCAATCTTGACACTCTCAGCTGCTGCACCCAACAAGCCAATTATTGCTACTTCTGGAGCTGCACCTCTCCTTGTTCAGACTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGACGCCGTTACAGCCCTCCATAATCTTTCCACTAGCATTGGGAATTCCACTGAACTTCTTGATGCAAGTGCTGTTTTCCCTCTGATCAACCTCCTTAAAGAGTGCAAGAAGTATTCTAAGTTTGCAGAAAAAGCCACAGCACTACTTGAAATCCTTTCCAACTCTGAAGAGGGACGAAATGCAATCACAATTGCTGATGGTGGAATCTTAACCCTAGTAGAGACAGTTGAAGATGGATCCCTAGTCAGCACAGAGCATGCTGTTGGAACTTTGCTATCATTATGTCTAAGCTGCCGAGATAAGTACCGGGAACTGATTCTTAAAGAAGGAGCAATTCCAGGTCTGTTACGACTAACAGTGGAGGGCACAGCTGAAGCTCAAGATAGAGCACGCACGCTTCTGGATTTGCTCAGAGATTCTCCCCCTGAAAAAAGACTAACCTCCTCAGTGCTGGAGAAAATTGTTTATGACATTGCTGAAAGGGTAGATGGAGTAGATAAAGCTGCTGAAACTGCCAAACGTTTGTTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAACTGCATCCAGCATAGGGCTGCATCTTGTACTCCTTCTGTGATTCCATCCACTTGA	1146	0.4546	MGEGENLEVETETETEAEGTSTWNLGKHRQILELSEKLMNGNLNTKIEAAREIRKLVRKSSSSSKTRLKLAAAGVIQPLVFMLSSSDLDARQSSLLALLNLAVRNERNKVKIVTAGAMPPLVELLKMQNSSIRELATAAILTLSAAAPNKPIIATSGAAPLLVQTLKSGSVQGKVDAVTALHNLSTSIGNSTELLDASAVFPLINLLKECKKYSKFAEKATALLEILSNSEEGRNAITIADGGILTLVETVEDGSLVSTEHAVGTLLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARTLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEHSMNCIQHRAASCTPSVIPST*	382

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g1082	381	SMART	arm_5	104	145	IPR000225	GO:0005515
	Apr9g1082	381	SMART	arm_5	146	186	IPR000225	GO:0005515
	Apr9g1082	381	SMART	arm_5	230	271	IPR000225	GO:0005515
	Apr9g1082	381	SMART	arm_5	63	103	IPR000225	GO:0005515
	Apr9g1082	381	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	198	242	IPR000225	GO:0005515
	Apr9g1082	381	MobiDBLite	consensus disorder prediction	1	15	-	-
	Apr9g1082	381	Gene3D	-	21	377	IPR011989	-
	Apr9g1082	381	PANTHER	ARM REPEAT SUPERFAMILY PROTEIN	20	347	-	-
	Apr9g1082	381	PANTHER	U BOX DOMAIN-CONTAINING	20	347	-	-
	Apr9g1082	381	MobiDBLite	consensus disorder prediction	1	21	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g1082	Apr-Chr9	20267790	20273035	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g1082	1	314	U-box Gene Family	AT3G54790	36.308	2.51e-40	150

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g1082	K08332		-	gmx:100782472	611.683

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