Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1054 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGTGGAATATCAGGAAGGACAGGACCACACTCTCTACCATTGGCAAGGATCAAGAAGATCATGAAGAAATCTGGGGAGGATGTTAAAATGATATCAGGTGAGGCTCCTATTGTTTTTTCCAAGGCTTGTGAACACTTCATTGAGGAGCTTACTAGAAGGTCTTGGATTATGGCTATCCAAGGCAAAAGGAGAACTTTGCACAAAGAAGATGTGACCTCTGCTGTTATAGCCACTGATATCTTTGACTTTTTGATCACTTTGGTTTCCAATTCTGGCAGCCATGCACTTGGTGTCCCCTCTAATTTGGAGATGGAAACTATAGATTACTCTTAA 369 0.4201 MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACEHFIEELTRRSWIMAIQGKRRTLHKEDVTSAVIATDIFDFLITLVSNSGSHALGVPSNLEMETIDYS* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1054 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Apr9g1054 122 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Apr9g1054 122 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 106 - -
Apr9g1054 122 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 106 - -
Apr9g1054 122 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1054 Apr-Chr9 19896319 19896687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1054 22 100 CCAAT-HAP5 Transcription Factor Family AT1G54830 65.823 1.66e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr9g1054 CBFD_NFYB_HMF 1.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1054 - - gmx:100820378 211.846