Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1053 ATGGAAAGTTTGGGTGCTAATTCAGACCAGTACGCCACCGTTTCATCTAATTCATCATCATCGTCATCATCATCGTCTGGAGGTGTTAGTAGTAGTGATGATAGCAATGGTAACAGTAATGGAAGTCTTACCTGGTATGGAATGAGGTTTCCCTCTGTTAGCCCCTTTCGTTCCCCACTCTCCTTTTTATTGGATTACTCTGGCATTCTACGATCACCCGATGATTCTGACGCTGTGATTGTCAACAATGGAGTTTCTGGTTCAGAATTAAGGTCTCAGCTTCAAACTCAACCGGTTGATGCTGCTGCTTCGGGGAACAGTGCAGGGGAAGTTGCAATAAGGATCATCGGAACTGGGGAGCATGATCAAAATGAGCCAAGTGGATCGAGCCAAGTGGGTTATGATGATTGTGATGTTGTGATGGGTGATAGAGAAGGACTGCCTGCATTGGATGATGATGGTGCTGAGGGTCATGGTGGAAGTGAGAGGGTTCCTTTGGTGTCGTCTTCTTCAGCTTCGTCCTTGGCTGGTAGTGGACAGGTTGACGGTGATGCCACTGGGAATGGCATAGAAAGTGAAAGTAGAGATTCCTCTTCCTACCAGAGGTTTGATATCCACCAAATTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCGCTCTTGTTGTTGGTTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGAGATAGGAAAGTCTCCATTCTTGTTGGTATCTCTTCTGCATTCATGCTTCACGTGATGTGCATTTACTGGTGGTATCGAAAAGATGATCTTTTGTACCCACTGGTCATGTTTCCTCCAAGAGAAACACCTTTCTGGCATGCAATATTCATTATCTTGGTCAATGATACATTGGTGCGGCAAGCTGCAATGGCTGTCAAGTGTGTCCTACTTATCTATTACAAAAATGGCAAAGGTCATAACTTCCGCCGGCAGGCTCAAATGTTAACTTTGGTTGAGTACACCCTACTATTGTATCGTGCCTTGTTGCCAACACCGGTTTGGTACCGGTTTTTTCTGAACAGGGATTATGGCAGTCTCTTCTCATCACTGACCACTGGGTTGTATTTAACTTTCAAGCTCACATCTGTCCTTGAGAAGTTCCAATGCTTCATTTCTGCCTTAAAAGCGTTATCAAGCAAGGAAGTTCACTATGGGGTTTATGCCACAATGGAACAGGTTAATGCTGCTGGTGACCTATGCGCTATATGTCAAGAGAAGATGCAAGCCCCTATCTTGTTGCGCTGTAAACACATTTTCTGTGAAGATTGTGTATTAGAGTGGTTTGAGAGAGAGAGGACTTGCCCTCTATGCCGAGCATTGGTTAAACCTGCTGACCTCCGAACCTTTGGAGATGGATCGACGAGTCTGCTTTTCCAGTTGTTTTAA 1482 0.444 MESLGANSDQYATVSSNSSSSSSSSSGGVSSSDDSNGNSNGSLTWYGMRFPSVSPFRSPLSFLLDYSGILRSPDDSDAVIVNNGVSGSELRSQLQTQPVDAAASGNSAGEVAIRIIGTGEHDQNEPSGSSQVGYDDCDVVMGDREGLPALDDDGAEGHGGSERVPLVSSSSASSLAGSGQVDGDATGNGIESESRDSSSYQRFDIHQIAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSILVGISSAFMLHVMCIYWWYRKDDLLYPLVMFPPRETPFWHAIFIILVNDTLVRQAAMAVKCVLLIYYKNGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSVLEKFQCFISALKALSSKEVHYGVYATMEQVNAAGDLCAICQEKMQAPILLRCKHIFCEDCVLEWFERERTCPLCRALVKPADLRTFGDGSTSLLFQLF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1053 493 MobiDBLite consensus disorder prediction 1 40 - -
Apr9g1053 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 480 IPR013083 -
Apr9g1053 493 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 16 493 IPR044235 GO:0061630|GO:1904294
Apr9g1053 493 MobiDBLite consensus disorder prediction 145 159 - -
Apr9g1053 493 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 493 - -
Apr9g1053 493 SMART ring_2 432 469 IPR001841 -
Apr9g1053 493 MobiDBLite consensus disorder prediction 164 195 - -
Apr9g1053 493 Pfam Zinc finger, C3HC4 type (RING finger) 430 473 - -
Apr9g1053 493 ProSiteProfiles Zinc finger RING-type profile. 432 470 IPR001841 -
Apr9g1053 493 SUPERFAMILY RING/U-box 423 475 - -
Apr9g1053 493 ProSitePatterns Zinc finger RING-type signature. 447 456 IPR017907 -
Apr9g1053 493 MobiDBLite consensus disorder prediction 145 195 - -
Apr9g1053 493 CDD RING-HC_RNFT1_like 431 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1053 Apr-Chr9 19879140 19886433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1053 57 493 C3H Transcription Factor Family AT5G01960 61.607 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1053 - K22379 gmx:100784614 600.127