Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1050 ATGAAGTTCCAGTTCCATGCTGTTCCATTTGTTCTTCTAAGCTTCACACTCTCTCTCTTTGGCCTGATTGTAGCTGACTTGGACTCTGACAAACAAGCTCTCCTTGAGTTCCTTTCCACTGTCCCACATGCTCCAAGGTTAAACTGGAGTGAGTCTACTCCAATATGCACTTCATGGGTAGGTGTTACTTGCAACTCAAATGGAACTCGTGTCACAGGAATCCATCTTCCAGGTATTGGATTCAAAGGATCCATTCCGGAGAACACTCTAGGGAAACTAGATGCACTTAGAATGCTGAGCCTTCATTCCAATGGCCTTAGAGGAAATCTTCCTTCTGATATCCTCTCCATTTTTTCACTCCAATATGTAAACCTGCAGCAGAATAACTTTTCAGGCCTTATCCCTTCCTCTATCTCAACTAAACTCATAGCATTGGATATTTCCTCTAACAACTTCTCTGGCAGTATCCCATCTACATTTCAGAATCTCACTAGACTTACTTGGTTGTATCTCCAAAATAATTCCATCTCTGGAGATATCCCTGACTTTAACCTTCCAAGTCTCAAGTATTTGAATTTGAGCTATAATAACTTGAATGGCACAATTCCAAATTCCATCAACAATTTCCCATACAACTCTTTTGTTGGAAACTCTCGCTTATGTGGACCACCTCTCAATAACTGTTCTTCAATCTTCCCTCCATCTTCTTCTCCTTCCCTTTCTCCTTCTCCTTCTCCTAAACATCAACCACTCTCTCCAGCATCTCCCCAAAATAAAAGAGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTCCTATACTTGCTCTAGCAATAGGGGGGTGTGCCTTTATCTCTCTCCTAGTTTTGGTGATCTTTGTATGCTGTTTGAAGAGGGAGAAGAGTGAAAGCAGTGGCATACTGAAAGGAAAGGCACCTTGTGCTGGAAAGACTGAGGTTTCAAAGAGCTTTGGCAGTGGAGTGCAAGAGGCTGAAAAGAACAAATTATTCTTCTTTGAAGGTTGCTCGTACAGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTTTGGAACAACATACAGGGCTGCTTTGGAGGATGGAACAGCAGTGGTAGTTAAAAGGTTGAGGGAAGTTCTGGTTGGAAAGAAGGAGTTTGAGCAACAGATGGAGGTTGTGGGAAGAATTGGAAGGCACCCCAATGTTATGCCCCTCCGAGCTTATTATTATTCCAAAGATGAGAAACTTCTAGTTTACGACTACATGTCAGGAGGCAACTTGTTTACCTTGTTGCATGGAAACCGAGGTGTTGGAAGAACTCCATTAGATTGGGATTCAAGAATAAAGATTTCACTCGGAGCTGCAAAGGGAATTGCTTCCATTCACACTGATCAGATGGGTTCAAAACTCACTCATGGCAACATCAAGTCATCCAATGTGCTCATAACTGAAGAACATGATGGCTGCATCACTGATGTTGGACTTAGTCCTTTAATGAGCACCCCATCAACCATGTCAAGAGGCAATGGTTACCGTGCTCCCGAAGTAACCGAGTCCCGGAAGATCACACAAAAGTCTGATGTTTACAGCTTTGGAGTGCTCCTTCTTGAAATGCTTACAGGCAAGACTCCACTGGGATATCCTGGCTATGATGACATGGTTGATCTTCCAAGGTGGGTGAGGTCCGTGGTTCGTGAGGAATGGACAGCTGAAGTTTTTGATGAGGAGCTGCTGAGAGGGCAATATGCTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCATTGGCTTGTGTGGCAAAGTTAGCAGATAATAGGCCAACAATGGATGAAGTTGTTAGGAACATAGAGGAAATTAGGCACCCTGGGTTGAAGAACCGCACTACATCGTCTGAGTCTGAATCTAATGTACAAACTCCATGA 1938 0.435 MKFQFHAVPFVLLSFTLSLFGLIVADLDSDKQALLEFLSTVPHAPRLNWSESTPICTSWVGVTCNSNGTRVTGIHLPGIGFKGSIPENTLGKLDALRMLSLHSNGLRGNLPSDILSIFSLQYVNLQQNNFSGLIPSSISTKLIALDISSNNFSGSIPSTFQNLTRLTWLYLQNNSISGDIPDFNLPSLKYLNLSYNNLNGTIPNSINNFPYNSFVGNSRLCGPPLNNCSSIFPPSSSPSLSPSPSPKHQPLSPASPQNKRATTSKSYFGLAPILALAIGGCAFISLLVLVIFVCCLKREKSESSGILKGKAPCAGKTEVSKSFGSGVQEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSFGTTYRAALEDGTAVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVMPLRAYYYSKDEKLLVYDYMSGGNLFTLLHGNRGVGRTPLDWDSRIKISLGAAKGIASIHTDQMGSKLTHGNIKSSNVLITEEHDGCITDVGLSPLMSTPSTMSRGNGYRAPEVTESRKITQKSDVYSFGVLLLEMLTGKTPLGYPGYDDMVDLPRWVRSVVREEWTAEVFDEELLRGQYAEEEMVQMLQIALACVAKLADNRPTMDEVVRNIEEIRHPGLKNRTTSSESESNVQTP* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1050 645 Pfam Protein kinase domain 356 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1050 645 Pfam Leucine rich repeat 119 176 IPR001611 GO:0005515
Apr9g1050 645 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Apr9g1050 645 MobiDBLite consensus disorder prediction 233 260 - -
Apr9g1050 645 Gene3D Ribonuclease Inhibitor 141 230 IPR032675 -
Apr9g1050 645 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Apr9g1050 645 ProSitePatterns Protein kinases ATP-binding region signature. 358 389 IPR017441 GO:0005524
Apr9g1050 645 MobiDBLite consensus disorder prediction 237 251 - -
Apr9g1050 645 Gene3D Phosphorylase Kinase; domain 1 317 427 - -
Apr9g1050 645 SUPERFAMILY L domain-like 40 224 - -
Apr9g1050 645 Gene3D Transferase(Phosphotransferase) domain 1 428 643 - -
Apr9g1050 645 ProSiteProfiles Protein kinase domain profile. 352 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1050 645 PANTHER OS05G0588300 PROTEIN 5 645 - -
Apr9g1050 645 SUPERFAMILY Protein kinase-like (PK-like) 356 621 IPR011009 -
Apr9g1050 645 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515
Apr9g1050 645 MobiDBLite consensus disorder prediction 626 645 - -
Apr9g1050 645 PANTHER LRR RECEPTOR-LIKE KINASE 5 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1050 Apr-Chr9 19859236 19863501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1050 8 643 Receptor kinase-like Gene Family AT5G58300 57.944 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr9g1050 Pkinase 2.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1050 - - gmx:100786974 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1050 9 19859236 19863501 Apr1g0562 1 6871234 6875755 PCT