Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1043 ATGGGTAGGCGAAAAAGTAAACCACATCGATCAGGTGGGATAATACTAGAGACAAATGCTACTGCTGAAACAGAACTGGATAAACAGAATGTTGTGGAAGCAGGGGAAGAAGCAAAAATTGATTCTGGTGGTGTTGATAAACCTTATTTTGTTGAGGTTGACCGGTCCAGTTGGTTGTCAAGTGAACATCTTGATATTTCTGAAGTTGTTTTGAGGGATTTGAATTTGAGAGAAGGCTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCTCCGGTACTCGTTAAGATTTCGGGTGTGTAATGTCAATAGTGTTCTTGGTCGAATTAAATTAGGTCATTGGCCTGTGTTACCCTATGCTGATATTCATCTAGAGTTTGTAAAAAGAGTTACTGATGATCACCATGTGGAAACATGTACAGTTTTGTTATCTGGTAGTTTTGATGGACCCAATGAAGGTGTTTCTGGTCTTATTCACATGGCAAGTTTGAAATTTGTTACATTGAGGCCAGTTCTTGGAATTAGGCTTTCTGAAGACATTTCCTCCCTCAGGGTAAGGGTTGAGGTATTGGAGAGTGCCTTTGATGCATGTGAGTCACTTCTTGATAGTTCTAGACAACTATGGAAAAAAAGTATGATGAATGTAATGTCTTGGCTACGTCCAGAAATAATGACTTCAGAAGTTAGGTATGGATTTGTTAGCTGTATGAATATGGAAGTTGATCCACAGAAAGAGATGGAAGATGACACTTGTAATGCCAAGAAACATGCGAGGTTTGATCCTGCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGAGGAGCCAATGCTTGAAGATGATATACCTGAGTTACTTCCTAAATTGAGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAGAGCAATGGAAAAGAGTCAGGGTGAAAGAGAAAGAGAACAGTTTCATTCTCCATTATGTGTGCCTGTGGATTTTCTGGACACCAGTTCTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGTAGATTGGCATCTGGAAATGATATACTAATTGATTCAGAGTCCCAAGATTGTGTTGGCTATTCACCTAAAGGAAAATATTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATAGCTGTGAGAGATGGAGAATATGTATGTCAGATGTGCTCTGAACTAATTCAAGCAACTGAATCTCCTATTGCCTCTGGGGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGTCATACACATCCGGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTACGAGACACATCTTTCTCCAATACATCTCTGATGGATATCAGTGATCTTGCCAGTGCGGACATTGTATTAACCACGTATGATGTGCTTAAAGAGGATTTATCACATGATTCTGATAGGCATGAAGGTGATCGTCACTTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACACTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGATGAGGCTCAGATGGTGGAGAGTAATGCTACGGCTGCCACTGAAATGGCTTTGAGACTCCATTCAAAGCATAATTGGTGCATTACTGGGACCCCGATTCAGAGAAAACTTGATGACTTATATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTTGATAAATTCAAGTGGTGGACAGACGTTATCCGAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACCCACAAAATTTTCAAACAAATTATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGAGGAATGCCTCTCATGGCTTACACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAGACTTGTGTTACAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATCGAAAAGTTCCAGGATCTGTCTCTTTGAATGGTTCATCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGATTGCGTTCCCTGCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGCTAGTTATTGCTCTGAATGGGCTTGCGGCAATAGCTGCAATACAAAAAGATTTTTCTCAAGCTGCTTCACTGTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCCAAAGATTTCCGCCTAGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCCGAAATACTCCCATTGACTACAAACTTTGCTTTAATATTGCCGACCAAAGGAAATCAGATATCTGGAGATTCTGGAGTTAAGGCAACCAGAAAACATGTTATTGTTAAGGTTGATCATTTACTTGTGAAGAGGCAAAAAAAAAGTGGCTGTGATAACCAAAAATTAACAGTGCCTTCTGCAGAACCATCAAATATTGCACCTAGCCTTTCAGAAAATGACTTGAATGAGGATAGGGAATTTAAAAAATTATCAGCAAGTTCAGTCAAATTTCTGATAGCAGAATGTGAAGATTCAAAACAAAAATACTTATCTGTCTTCAATTCAAAGCTATCTGCAGCTCAACAAGAGTTTCAAAATTCATATGCTCAGGTATGTAACGCATATCGTGACAGCAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAACAAGGATTTCTCTACTGAGTTGATTAGAAAGATTGAGGAAGCCATCTCAGGAACTTCAAATAATTCAAAGTCATCAAGAATAGCTGACCGTTTCCGGAGCATAAGCTCCCTGAAATATCAAATTCAGACAAGTTTGGATCAGTTAGAGGCCTCTAGGAAAGTACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAGGAAGAAGATATTGAACGCGTTGGTAAATGTCAAAATTGTCAGCCTAATTGTGATGGTCCCCCATGTGTTTTGTGTGAACTAGATGAATTGTTTCAGGATTATGAAGCAAGGCTCTTTGTTCTTAAGAACGAACGAGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAATTTTGCACTGAATCATTTCCTCTCAAAGATATCACAATCTAATCACAATTCAACAGTATCTGATTTTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCGTCTGAGTTGGAGCTTATTCTTGGAGTTATAAAGAACTATTGCAAGGCTCGGCTAGGAAGGGACAGTGTCTCAGCAGCCACCGAGCATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGATCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCAGTTTCGCGTTTGCACCTAAGGGCAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTATCTGCGGCCAGCTCAAACTTTTCCCATGATAAGTTTATGTCGTTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCACCGAAAAGTCCAAATAGTTCTTCATTCACACAAGAGACAACTGCAGTGTCAAACTCTACAGAAGAGAAGGGTGCACTCATATCTAGAATTGATGAAGAAACATGCCCAATTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAACAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCCACATGTCGACAGCATACTGATTTTGGAAACATTGCTTATGCTGTTGATGCACAAAATGAATCTTCCAATCCTTCAACGCTGCATACAATTGACAGCAGTGAAAAATGTGAAGCATCCATTACTGTTAAAGGCTCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTACTGATCATAAAGCCAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCCTTTGCCGCCAATAACATCACCTACATCCGGATGAAGGGGGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAATACAGAATGGCACAAAAGGATGTGAGGAGTCAACACCACAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCTGCTGCTGAAGCACAAGCAATCAGCCGTGTACATCGAATTGGACAAAAAAATAAGACCCTTATTCATCGTTTCATTGTAAGAGATACTGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATTAGTGGGAATACTAAGAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTACTCTCTAGAGCACCACTAACTATGCCAGAAAGTGATGAAAATCCTAATACAAATACAGATCTAAGACACTTGCCACCAACAATGGCCGCTGCTATTGCTGCTGAGAGGAGACTTAGTGAACAAAGGACATGA 4878 0.3998 MGRRKSKPHRSGGIILETNATAETELDKQNVVEAGEEAKIDSGGVDKPYFVEVDRSSWLSSEHLDISEVVLRDLNLREGFSGFELSEDFYQDLRYSLRFRVCNVNSVLGRIKLGHWPVLPYADIHLEFVKRVTDDHHVETCTVLLSGSFDGPNEGVSGLIHMASLKFVTLRPVLGIRLSEDISSLRVRVEVLESAFDACESLLDSSRQLWKKSMMNVMSWLRPEIMTSEVRYGFVSCMNMEVDPQKEMEDDTCNAKKHARFDPAGFYEAIKPSKEEPMLEDDIPELLPKLRPYQRRAAFWMVERERAMEKSQGEREREQFHSPLCVPVDFLDTSSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRLASGNDILIDSESQDCVGYSPKGKYLKSKQGCESKTYKTTIAVRDGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHPGSLKTCVYEGVRDTSFSNTSLMDISDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHNWCITGTPIQRKLDDLYGLLRFLKASPFDKFKWWTDVIRDPYEKGDMGAMEFTHKIFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVTDAHEVIESLRNDILNRKVPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRKLVIALNGLAAIAAIQKDFSQAASLYNEALTLAEEHSKDFRLDPLLNIHIHHNLAEILPLTTNFALILPTKGNQISGDSGVKATRKHVIVKVDHLLVKRQKKSGCDNQKLTVPSAEPSNIAPSLSENDLNEDREFKKLSASSVKFLIAECEDSKQKYLSVFNSKLSAAQQEFQNSYAQVCNAYRDSRTDQNTFWWLEALHHAEQNKDFSTELIRKIEEAISGTSNNSKSSRIADRFRSISSLKYQIQTSLDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKISQSNHNSTVSDFHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRDSVSAATEHLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGENELSAASSNFSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPPKSPNSSSFTQETTAVSNSTEEKGALISRIDEETCPICQEKLGNQKMVFQCGHVTCCKCLFAMTEQRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDAQNESSNPSTLHTIDSSEKCEASITVKGSYGTKIEAVTRRILWVKATDHKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFRGIQNGTKGCEESTPQSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVRDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESDENPNTNTDLRHLPPTMAAAIAAERRLSEQRT* 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1043 1625 MobiDBLite consensus disorder prediction 881 900 - -
Apr9g1043 1625 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1606 - -
Apr9g1043 1625 Pfam Zinc finger, C3HC4 type (RING finger) 1312 1359 IPR018957 GO:0046872
Apr9g1043 1625 SMART ring_2 1312 1359 IPR001841 -
Apr9g1043 1625 MobiDBLite consensus disorder prediction 1274 1300 - -
Apr9g1043 1625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1298 1380 IPR013083 -
Apr9g1043 1625 Gene3D - 1382 1601 IPR027417 -
Apr9g1043 1625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 351 605 IPR014001 -
Apr9g1043 1625 SMART ultradead3 286 613 IPR014001 -
Apr9g1043 1625 Pfam Helicase conserved C-terminal domain 1408 1529 IPR001650 -
Apr9g1043 1625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1409 1580 IPR001650 -
Apr9g1043 1625 Pfam SNF2-related domain 293 739 IPR000330 GO:0005524|GO:0140658
Apr9g1043 1625 MobiDBLite consensus disorder prediction 1275 1300 - -
Apr9g1043 1625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 1595 IPR027417 -
Apr9g1043 1625 CDD DEXQc_SHPRH 290 643 - -
Apr9g1043 1625 SMART helicmild6 1437 1529 IPR001650 -
Apr9g1043 1625 SUPERFAMILY RING/U-box 1307 1364 - -
Apr9g1043 1625 CDD SF2_C_SNF 1403 1540 - -
Apr9g1043 1625 ProSiteProfiles Zinc finger RING-type profile. 1312 1360 IPR001841 -
Apr9g1043 1625 Gene3D - 431 664 IPR038718 -
Apr9g1043 1625 Gene3D - 353 395 IPR038718 -
Apr9g1043 1625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 642 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1043 Apr-Chr9 19772999 19788622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1043 290 737 RAD5 or RAD16-like Gene Family AT5G43530 30.243 5.79e-47 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr9g1043 SNF2_N 5.4e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1043 K15710 - gmx:100776659 2856.24