Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1031 ATGTCTCAGCCACTGCTAGACATAGGGGATGAGGAAGGTGAAAGCAATGTCACTTTGTTGGTTTCTTCTTCAGCCACCATGGAAAGTGTGTGCCTGAATGGTTCAAAATTGAAAGAGCGCAACTACATGGGGTTATCTGATTGTTCATCAGTGGACAGCTCCATCCCGTCCTTCTCAGATGAGAGTAAAAGTAATCTGAACCTTAAAGCAACTGAGCTCAGACTTGGGCTTCCAGGATCACAGTCTCCTGAACGCGATTCGGATCTTTGCTTTAGAAGTTCAACTCAATTTGATGAAAAGCCACTGTTTCCTTTGCATCCTGCAACCGATGATCATCATTCCTCCTCAAAGCCTGCTGTTTTGGGGAACAAAAGAGGATTCTCAGATGCCATGAATGGATTCTCAGAGGCGAAATTGCTTGTTAATTCTGAGGTCAGCACTAAATTGTCACCCAGGCCTTCTAATGTGGGGTTGAAACCGAGTTCTATGCTTGATAATGTTGGAACACAGCAAGCCAAAGCCAAAGAAATAGCAACAACAAATGTTGGTCTTGAGAGTCCTCATGCTGTCAATGAAAGCAGACCAAGTCTTAATGGTTCTGCTAATAATAACAGCAGTGCACCAGCTAGCAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCTACTACTTCAAAGAATGTTCAAGAAGTAGATGGAACAGCCAGGTCTGGTGTTCTCTTTGTGAAGGTCAGTATGGATGGGGCTCCATATTTAAGAAAAGTAGACCTGAAGAATTACTCTGCATATGCAGAACTATCTTCTGCTCTGGAAAAGATGTTCAGTTGTTTTACCATAGGTCAATGTGGATCTCATGGAAATCTTGGAAGGGAGATGCTGAATGAAACCAAGCTGAAGGATCTGCTTCATGGATCAGAAAATGTTCTTACATACCAGGATAAAGATGGTGACTGGATGCTCGTGGGTGATGTTCCCTGGGAGATGTTTATTGATACATGCAGGAGGCTAAGGATCATGAAGAGCTCCGATGCCATTGGTCTAGCACCAAGAGCTGTTGAAAAAAGTAAAAGCAGGAACTAG 1101 0.4332 MSQPLLDIGDEEGESNVTLLVSSSATMESVCLNGSKLKERNYMGLSDCSSVDSSIPSFSDESKSNLNLKATELRLGLPGSQSPERDSDLCFRSSTQFDEKPLFPLHPATDDHHSSSKPAVLGNKRGFSDAMNGFSEAKLLVNSEVSTKLSPRPSNVGLKPSSMLDNVGTQQAKAKEIATTNVGLESPHAVNESRPSLNGSANNNSSAPASKAQVVGWPPIRSFRKNSLATTSKNVQEVDGTARSGVLFVKVSMDGAPYLRKVDLKNYSAYAELSSALEKMFSCFTIGQCGSHGNLGREMLNETKLKDLLHGSENVLTYQDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1031 366 Pfam AUX/IAA family 71 357 IPR033389 -
Apr9g1031 366 SUPERFAMILY CAD & PB1 domains 243 347 - -
Apr9g1031 366 ProSiteProfiles PB1 domain profile. 246 348 IPR000270 GO:0005515
Apr9g1031 366 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 360 IPR003311 GO:0005634|GO:0006355
Apr9g1031 366 MobiDBLite consensus disorder prediction 184 211 - -
Apr9g1031 366 Gene3D - 241 360 - -
Apr9g1031 366 PANTHER AUXIN-INDUCED PROTEIN 23 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1031 Apr-Chr9 19659867 19664720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1031 260 348 B3 DNA Binding Superfamily AT1G19220 32.584 2.41e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr9g1031 AUX_IAA 7.4e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1031 K14484 - gmx:100815447 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1031 9 19659867 19664720 Apr9g1031 9 19659867 19664720 ECH