Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1029 ATGGAGCTCTATGACCATGATTTCTTGGAGGAACTTATGTCTCTAAGAAGAGAAACATGGGACACCAATCCATGCTTAGAAGAAAACCATGTTTTCTCTAATGGTTTGAGTTTTGACTGTTATAATCAAAACTCTTCTACTTTTCTTCCAAATTCTTCCTCTTGCCAAGAAGTTCCTCAAAGTTACAACAATGACTATGCCTTCAATGAAATCTATAGTTCCTTACTTGATGATTTCTCTGCACCCCAGATCCTAGATTCATCCTATAACACCCTTGATACCCCACTTAGTAACTTTGCATTTATCGCTCAAGAAGATTATCCAATGTCCATGATGATGGAAGAAGATCCGGGTTTGCTAGGGGAAGAGCTTCATAGTTTGGACTTGCAAACCACATGCAAAGTGGAGCCTAATCATTCCCCTGAAATGCCTGTTTTCAACAGAGATACATGTGTGGAAAGAAAGAATAGAGCAAAGAAGATGCAGGGGCAACCCTCCAAAAATCTAATGGCGGAAAGGAGAAGAAGAAAGAGATTGAATGATAGGCTTTCCATGCTAAGGTCAATTGTCCCTAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAACTCCTGGAGAAGATTAATAATTTGAAACAAGAAATAGAAGCCGATTCCAACATTGCTAGCATTTTGAAGGATGTAAAGCCAAACGAAATCTTAGTGAGAAATTCCCCTAAGTTTGATGTAGAGAGGAGGAATGTCAACACAAGGGTAGAGATCTGCTGTGGAGCGAAGCCAGGCTTATTGTTGTCTACAGTAAACACCTTGGAAGCATTAGGCCTTGAGATCCAACAATGCGTTATTAGCTGTTTCAATGACTTCACAATGCAGGCTTCATGCTCAGAGGAATTAAAGCAGAAGACGATTATGAGTTCTGAAGATATAAAGCAAGCACTATTTAGAAGTGCAGGATATGGAGGACCATGTTTGTGA 999 0.3944 MELYDHDFLEELMSLRRETWDTNPCLEENHVFSNGLSFDCYNQNSSTFLPNSSSCQEVPQSYNNDYAFNEIYSSLLDDFSAPQILDSSYNTLDTPLSNFAFIAQEDYPMSMMMEEDPGLLGEELHSLDLQTTCKVEPNHSPEMPVFNRDTCVERKNRAKKMQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEIEADSNIASILKDVKPNEILVRNSPKFDVERRNVNTRVEICCGAKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELKQKTIMSSEDIKQALFRSAGYGGPCL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1029 332 CDD ACT_UUR-ACR-like 258 299 - -
Apr9g1029 332 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Apr9g1029 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 332 - -
Apr9g1029 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Apr9g1029 332 PANTHER DNA BINDING PROTEIN 3 332 - -
Apr9g1029 332 Gene3D - 152 228 IPR036638 GO:0046983
Apr9g1029 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 225 IPR036638 GO:0046983
Apr9g1029 332 SMART finulus 169 218 IPR011598 GO:0046983
Apr9g1029 332 Coils Coil 202 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1029 Apr-Chr9 19631235 19633123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1029 154 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.835 3.63e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g1029 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1029 - - gmx:100814388 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1029 9 19631235 19633123 Apr9g1029 9 19631235 19633123 ECH