Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1027 ATGGATTCCCGCGATTCCTCTCCACGCTCTCGCGACATCGACAACGATAACCCTTCCCTCGACGAACAACCTCCTTCCTCCTACAAAGTCAAGTTAATGTGCAGCTATGGCGGCAAAATCCAACCCCGGCCACACCACAACAACCTCACCTACGTCGCCGGCGACACCAAAATCCTCTCCGTTGAACGTTCCATCAACTTCTCCTCCCTCATCACCAAACTCTCTTCCCTCACAAACGCCACCAACAACTTCTTCTTCAAGTACCAACTCCCCGGCGAAGACCTCGACGCCTTGATCTCCGTCACCAATGACGAAGACCTCCACCACATGATGCTTGAGTACGATCGCCTGTACCGCACTTCACCTAGACCCGCACGGTTAAGGCTCTTCCTCTTCCCCCTCACCAACAACAACAGCAGCAGTGCTCATTCTTCGCAAACCGTTAATTTCGGACTCCCCGAGTCTAAGCCGGAGCGTCAGTGGTTCGTCGACGCTCTCAATTCCGTGCAGGTTCCGATTCTAGAAGGTTCTTCTCCACCGCCAATGGCGCCACCGGCGAATCCGGATTTTCTGTTCGGATTGGATAAGCCGCCGAAACCGACGGATTTTGCGACGGTTACGGATGTTCCGGGGAAGGAATCGGCCGTGGAATCGGAGAATTTTTCTGAGGATCGTCGAGCGGTTAGAGAGTCTGAATCGGAGATTCTGGAGCTGCACAAGTTGCAGCTGGTGAACAATGAGCAAATTTCGCAACGAAAAATCGATGATGATAGCGGAAGACGTTACGGTGTGGACTCTTTCGCTCCGAAAAATTCTGAGAAAGTGACGCCGTTAGTGGCGCATGCGCAAGGGCAGGTGCAACCCGTTCCTGTTCATGGAACGGTGTCGTTTGTGCAGGAGAGGAATTTTTCGTTGGGGGTTTCTGCAACCGGGAATGAACCGGTTCCGGTTTATTTCATTCAAACGCCTTCTGGAATATTCCAAGCCGTGAGGCCAATGACTGGACCGGTGGGTCAACCGGTGTATTTGGTTCAAACGCCAGGTTCGGTTCCGCATTCGGCGCATAAAGTTAGTTACGGTGGTTCGGATGTTGGTGTAGGCTCGGAGCGTGGGTATTCGCAGGTTTCGTACTTGAATAATGAGAGGTCTGGCGGCGGCGCACGGTGGTGA 1170 0.5316 MDSRDSSPRSRDIDNDNPSLDEQPPSSYKVKLMCSYGGKIQPRPHHNNLTYVAGDTKILSVERSINFSSLITKLSSLTNATNNFFFKYQLPGEDLDALISVTNDEDLHHMMLEYDRLYRTSPRPARLRLFLFPLTNNNSSSAHSSQTVNFGLPESKPERQWFVDALNSVQVPILEGSSPPPMAPPANPDFLFGLDKPPKPTDFATVTDVPGKESAVESENFSEDRRAVRESESEILELHKLQLVNNEQISQRKIDDDSGRRYGVDSFAPKNSEKVTPLVAHAQGQVQPVPVHGTVSFVQERNFSLGVSATGNEPVPVYFIQTPSGIFQAVRPMTGPVGQPVYLVQTPGSVPHSAHKVSYGGSDVGVGSERGYSQVSYLNNERSGGGARW* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1027 389 Pfam PB1 domain 48 133 IPR000270 GO:0005515
Apr9g1027 389 Gene3D - 50 133 - -
Apr9g1027 389 CDD PB1_UP2 33 132 - -
Apr9g1027 389 SUPERFAMILY CAD & PB1 domains 47 142 - -
Apr9g1027 389 MobiDBLite consensus disorder prediction 1 26 - -
Apr9g1027 389 PANTHER OS05G0427100 PROTEIN-RELATED 2 345 - -
Apr9g1027 389 SMART PB1_new 44 134 IPR000270 GO:0005515
Apr9g1027 389 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 2 345 - -
Apr9g1027 389 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1027 Apr-Chr9 19582279 19583677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1027 28 177 MAP Kinase Kinase Kinase AT5G57610 40.667 1.66e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1027 - - vra:106764239 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1027 9 19582279 19583677 Apr9g1027 9 19582279 19583677 ECH