Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1020 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGTAGGCAAGTAACGTTCTCGAAGCGAAGGAATGGTTTGCTGAAAAAAGCCAAGGAACTTGCGATCTTGTGCGATGCTGAGGTAGGAGTTATGATCTTCTCCAGCACTGGCAAACTCTACGATTTCGCCAGTACCAGCATGAAATCAGTAATTGACCGATACAACAAATCAAAAGAAGAACATCATCAACTTGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACAGGAAAATGATGGGGGAAGAACTATCAGGTTTAACAGTCAAAGAATTACGAAATTTGGAGAACCAATTGGAAATTAGCCTTCATGGTGTCCGCATGAAAAAAGATCAACTTTTAATGGATGAAATACAAGAACTAAATCGAAAGGGAAACCTCATACACCAAGAAAATATGGAACTGTATAAGAAGGTAAACCTAATTTGTCAAGAAAACATGGAATTGAAAAAAAAGGTCTATGGAACAAAAGATGAAAATGAGACAAAAAGAAATTCTGTTCTCACAAATGGCCTAGTCATAGGAGAGGATTTGCAAGTTCCTGTGAATCTCCAGCTAAGCCAGCCAGAGAACCAAAACTACAAGGCACCTTCAGGAACTACAAAGTTGGGGTATGATTATGATCATTTTGCTGATAGACCACACTAA 741 0.3941 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTSMKSVIDRYNKSKEEHHQLGSSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELRNLENQLEISLHGVRMKKDQLLMDEIQELNRKGNLIHQENMELYKKVNLICQENMELKKKVYGTKDENETKRNSVLTNGLVIGEDLQVPVNLQLSQPENQNYKAPSGTTKLGYDYDHFADRPH* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1020 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Apr9g1020 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Apr9g1020 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr9g1020 246 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Apr9g1020 246 MobiDBLite consensus disorder prediction 218 246 - -
Apr9g1020 246 Coils Coil 86 113 - -
Apr9g1020 246 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g1020 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr9g1020 246 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g1020 246 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Apr9g1020 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr9g1020 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr9g1020 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr9g1020 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 234 - -
Apr9g1020 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr9g1020 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1020 Apr-Chr9 19481103 19497790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1020 1 228 MADS-box Gene Family AT4G37940 62.719 3.81e-95 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr9g1020 K-box 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1020 K09264 - gmx:100812413 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1020 9 19481103 19497790 Apr9g1020 9 19481103 19497790 ECH