Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1018 ATGGCCTCAGAAGCAGTGCAGCTACGCGTCGAAGACAGTCAAGTGGTTATGGACAATGGCATACTGCAAGTGTATTGGGACGTTGTATGGAGTGAAGCCGGAAGTACAGGAACAACTGGGACATTTGAAAAGATTATTGGGACAAGTTTTAATGTAATAACTGAAAATGAGGAACAGGTTGAAATCTCATTTACAAGTGAGTGGGATCCATCTCTGAAAGGAAAGCGAGCACCTCTAAATATCGACAAAAGGTATGTGATGCTTCGTAATTCCTCGGGCTTCTACTCTTACGCCATCTTTGAACACCTAAAGGAGTGGCCTAATTTCAACATACCTCAAATCAGGATTGTTTATAGGCTTCGAAAAGACATGTTTCATTACATGGCTGTTTCGGATAATAGACAAAGATTTATGCCTCTCCCAGACGACCGGTTACCCGGAAGAGGAAAAGAACTAGTTCCCCCTGAAGCAGTTTTGCTAGTCAATCCCGTGGAGCCAGAGTTTAAAGGAGAGGTGGATGACAAGTACCAATACTCGAGTGAAAACGAAGATCTTAAGGTCCATGGATGGATAAGTTCCCAACCCGAAACTGATTCAGCAATGGGGTTCTGGGTAATCATACCAAGCAATGAGTTCCGATCAGGTGGCCTTGTTAAGCAGAACTTAACCTCTCACGTAGGCCCAATAAGCCTCGCCATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTCTCAAACTTCAACCAAATGAGCCTTGGAAAAAAGTTTTTGGACCAACTTTTGTTTATCTCAACAGTTTGTTGGATGGTGGGGACCCACTGGAGCTCTGGGAAGACGCCAAATATCAGATGAACGAGGAGGTTCAAAGTTGGCCCTATGACTTTCCAGCTTCGGAGGATTTTCAAAAGTCTGGCCAAAGGGGTAGTGTGTGTGGCACTTTACTAGTCCAAGACAGGTGCCTAAGTAACGAGTACATATTAGCAGAAGGCGCATACGTAGGACTGGCACCACCAGGAGAAGCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAGTTTTGGACTAGAGCAAACGAGGAAGGCTACTTCTCAATCAATAATATTCGTAGTGGAGAATACAATCTCTACGCGTGGGTTCCAGGTTTCATTGGAGAGTATTGGAACAATGTTGTCCTCACCATAACCCCAGGTTGTGAAATAAACGTTGGTGACATTATTTATGAGCCTCCAAGAGATGGTCCTACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCAGGGTTCTATGTTCCTGATCCTAATCCAGAGTACATAAATAAGCTTTTTGTCGACCATCCAGATAAGTTTAGGCAGTATGGTTTGTGGGAAAGATATGCAGATTTATACCCAAATGAAGATTTAATTTATACTGTTGGTGTCAGTGACTATAGCGAAGATTGGTTCTTTGCACAAGTCACCCGGAAGAAAAATGATGGCAGTTATCAAGGAACTACGTGGCAAATTAAGTTCAACCTCGATAACGTGGAGGAGAGTGGAATCTACAAATTGCGAGTGGCACTAGCAAGTGCAAATGTCTCCGAATTACAGGTTAGAGTGAATGATCAAAACCAAGATCCTCCACTATTTACTACGGGAGTGATTGGGAAGGACAATGCAATCGCTAGACATGGGATTCATGGACTCTACTGGCTATTCAGTATTGATGTGCCATATCTTCAGCTAGTGAAAGGCCTTAATACTATATTCCTAACACAGGCAATGGCTACTGGCCCCTTGGTCCTCTTCCAGGGGATTATGTATGACTATATCCGTTTAGAAGGCCCTAACCCTTTTCTTCTCATAAAAACCAATTCAGTATGA 1866 0.4352 MASEAVQLRVEDSQVVMDNGILQVYWDVVWSEAGSTGTTGTFEKIIGTSFNVITENEEQVEISFTSEWDPSLKGKRAPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPNFNIPQIRIVYRLRKDMFHYMAVSDNRQRFMPLPDDRLPGRGKELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENEDLKVHGWISSQPETDSAMGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNSLLDGGDPLELWEDAKYQMNEEVQSWPYDFPASEDFQKSGQRGSVCGTLLVQDRCLSNEYILAEGAYVGLAPPGEAGSWQRECKGYQFWTRANEEGYFSINNIRSGEYNLYAWVPGFIGEYWNNVVLTITPGCEINVGDIIYEPPRDGPTLWEIGIPDRSAAGFYVPDPNPEYINKLFVDHPDKFRQYGLWERYADLYPNEDLIYTVGVSDYSEDWFFAQVTRKKNDGSYQGTTWQIKFNLDNVEESGIYKLRVALASANVSELQVRVNDQNQDPPLFTTGVIGKDNAIARHGIHGLYWLFSIDVPYLQLVKGLNTIFLTQAMATGPLVLFQGIMYDYIRLEGPNPFLLIKTNSV* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1018 621 Pfam Polysaccharide lyase family 4, domain III 416 607 IPR029411 -
Apr9g1018 621 CDD RGL4_M 307 406 IPR029413 -
Apr9g1018 621 Pfam Polysaccharide lyase family 4, domain II 330 402 IPR029413 -
Apr9g1018 621 SUPERFAMILY Starch-binding domain-like 307 403 IPR013784 GO:0030246
Apr9g1018 621 Pfam Rhamnogalacturonate lyase family 25 172 IPR010325 -
Apr9g1018 621 SUPERFAMILY Galactose-binding domain-like 413 608 IPR008979 -
Apr9g1018 621 CDD RGL4_C 418 608 - -
Apr9g1018 621 Gene3D - 414 608 - -
Apr9g1018 621 Gene3D - 305 403 - -
Apr9g1018 621 CDD RGL4_N 8 274 - -
Apr9g1018 621 PANTHER LG27/30-LIKE GENE 24 611 - -
Apr9g1018 621 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 24 611 - -
Apr9g1018 621 Gene3D - 29 247 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1018 Apr-Chr9 19396843 19402035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1018 1 611 Polysaccharide Lyase AT1G09890 60.498 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1018 K18195 - gmx:100815677 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1018 9 19396843 19402035 Apr9g1018 9 19396843 19402035 ECH