Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1012 ATGGAACCAGCAATGTACGGACACGCCCAGCCTGTAAACATGCCCGGACAGATCGCCGCCGGCGAAAGCGACGACGGCTCCGGCGCCGACCCCGCCATCGACGGCCACCACCACATTCACTACGAAACGCACGCGCTCGAGGACGGTGGCGGTGGAGTTGGCGGTGGCGGCGTTGTCGTCGAGGATGTTACCTCTGATGCTGTCTATGTTTCTGGCGGTTGTGGCCCTGAAGAGTCTAGTCAACTTACGCTGTCGTTTCGTGGCCAAGTTTATGTTTTCGATGCTGTTACGCCTGATAAGGTTCAAGCTGTATTGTTACTGTTGGGTGGATGTGAACTATCTTCAACTGGTTCGCCATGTGTGGATACTGTACCTCAACAGAATCAGAGGGGTTCAATGGAATATCCAGCACGATGTAGTCAACCACAGCGAGCTGCATCTTTAAATAGGTTCAGGCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTCAGATATAGTGTACGTCAAGAAGTTGCGCTCAGGATGCACCGTAATAAGGGCCAGTTCACTTCATCAAAGAAACAAGATGGTGCTAATTGTTGGGGTACAGACCAAGAGTCAGGACAGGATGATAGTCAATCAGAAACCTCATGCACGCATTGCGGCATTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCGAGGTCACTTTGCAATGCCTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCAGGAACACTCTCTTGCCCCGGTTGAGCAGGTTGATGAAGGTAATGACTCAGACTCTCGGACCGCTGTCCCCGCACATAATAATCTTGCTGCTTTCTCTGATAATGATAATCAAGCTTTGGTAGCTGATCGTTGA 903 0.5061 MEPAMYGHAQPVNMPGQIAAGESDDGSGADPAIDGHHHIHYETHALEDGGGGVGGGGVVVEDVTSDAVYVSGGCGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSTGSPCVDTVPQQNQRGSMEYPARCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANCWGTDQESGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLAPVEQVDEGNDSDSRTAVPAHNNLAAFSDNDNQALVADR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1012 300 MobiDBLite consensus disorder prediction 1 35 - -
Apr9g1012 300 Pfam CCT motif 144 186 IPR010402 GO:0005515
Apr9g1012 300 Pfam tify domain 76 109 IPR010399 -
Apr9g1012 300 Pfam GATA zinc finger 212 247 IPR000679 GO:0006355|GO:0043565
Apr9g1012 300 PANTHER GATA TRANSCRIPTION FACTOR 25 5 276 - -
Apr9g1012 300 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Apr9g1012 300 MobiDBLite consensus disorder prediction 185 225 - -
Apr9g1012 300 ProSiteProfiles GATA-type zinc finger domain profile. 206 264 IPR000679 GO:0006355|GO:0043565
Apr9g1012 300 MobiDBLite consensus disorder prediction 276 291 - -
Apr9g1012 300 MobiDBLite consensus disorder prediction 256 300 - -
Apr9g1012 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 259 - -
Apr9g1012 300 CDD ZnF_GATA 211 257 IPR000679 GO:0006355|GO:0043565
Apr9g1012 300 SMART GATA_3 206 259 IPR000679 GO:0006355|GO:0043565
Apr9g1012 300 MobiDBLite consensus disorder prediction 179 230 - -
Apr9g1012 300 ProSiteProfiles Tify domain profile. 75 110 IPR010399 -
Apr9g1012 300 ProSitePatterns GATA-type zinc finger domain. 212 239 IPR000679 GO:0006355|GO:0043565
Apr9g1012 300 Gene3D - 202 261 IPR013088 GO:0006355|GO:0008270
Apr9g1012 300 SMART tify_2 75 110 IPR010399 -
Apr9g1012 300 PANTHER GATA TRANSCRIPTION FACTOR 28 5 276 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1012 Apr-Chr9 19291802 19297051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1012 76 299 Tify Gene Family AT4G24470 58.577 3.53e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr9g1012 CCT 2.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1012 - - pvu:PHAVU_008G182900g 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1012 9 19291802 19297051 Apr9g1012 9 19291802 19297051 ECH
Apr9g1012 9 19291802 19297051 Apr5g0997 5 14552255 14556047 PCT