Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1002 ATGGGTGGTGCATGTTCTTTCAAGCCATTCCAAACAGTCACATTTTCCATTTTCTTCTTCTTCGTCGTCACCACGACCACCTTCATTCTAACCGTCGCAAACACCGACCCCGATTTCGTCAAAACTAACACCGCATCCCTTCCGTTTTCAAGTTTGGAATACGATGGAAGTGCCGCGTCACCGCCGGTTAATTCAACAGAAGCAAAGTCTCGTTCAGTGTCGTTAACGCCAAGCACGGCCATTATCGTTGGCGTTTTAACGGCCACGTTTTGTCTCACCTTCCTTCTGCTTCTCTACATCAAGCACTGCAGTGGCGGCAACACCTTCACATTTTCCCCCAATTCTCGACCCACGCACGAGAGGAAGAACTCCGGCATCGAACGAGCCATCGTGGAATCGTTGCCGATATTCCAATTCGAATCGCTGAGGGGACAAAAGGACGGTCTCGATTGCGCGGTGTGTCTCACGCGCTTCGAGGACCCTGAGTTTTTGAGGCTGTTACCCAAGTGCAAGCACGCTTTCCACGTAGAGTGCGTGGACACGTGGCTGGATTTGCACTCCACGTGTCCGCTCTGTCGCCACAAGTTTATTAAAGAAAAA 600 0.5083 MGGACSFKPFQTVTFSIFFFFVVTTTTFILTVANTDPDFVKTNTASLPFSSLEYDGSAASPPVNSTEAKSRSVSLTPSTAIIVGVLTATFCLTFLLLLYIKHCSGGNTFTFSPNSRPTHERKNSGIERAIVESLPIFQFESLRGQKDGLDCAVCLTRFEDPEFLRLLPKCKHAFHVECVDTWLDLHSTCPLCRHKFIKEK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1002 200 PANTHER RING-H2 FINGER PROTEIN ATL43 51 195 - -
Apr9g1002 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Apr9g1002 200 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Apr9g1002 200 CDD RING-H2_PA-TM-RING 150 193 - -
Apr9g1002 200 Pfam Ring finger domain 150 193 IPR001841 -
Apr9g1002 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 51 195 - -
Apr9g1002 200 SMART ring_2 151 192 IPR001841 -
Apr9g1002 200 SUPERFAMILY RING/U-box 130 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1002 Apr-Chr9 19144025 19149930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1002 74 199 C3H Transcription Factor Family AT5G05810 56.338 3.97e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1002 K19041 - aprc:113847776 373.629