Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1001 ATGGCAAGACAGAAAATAAAGATAAAGAAAATTGATAATTTAACGGCGAGGCAAGTGACGTTTTCTAAGAGAAGGCGAGGGATATTCAAGAAAGCTGAAGAGCTTTCAGTACTGTGCGATGCTGAGGTTGGTCTCATTATTTTCTCAGCTACTGGGAAGCTCTTTGAATACGCCAGCTCCAGTATGAAGGACATAATTACAAGGTATAATCAGCACTTACATGACACCAACGAATCGGACAGATCCCAAAAGCTGCAGCTAGAGCATTACGTTGAATTGAGCAAGGAAGTAGCTGATAAAACCCAACAACTAAGGCAGATGAGTGGTGAGGATTTTGAAGGGCTAAATTTAGATGACTTAAAGCAACTGGAGAAAACACTTGAAACAGGACTCGAGCACGTGGTTGAGACTAAGGAAACGCGTATTATGGGTGAGATCATTGCACTTCAGCAAAAGGGAATCAAGTTAGAAGAAGAGAACAGGAAGCTAAAGCAAAAGACGGCTATGCTGTGGAAGGGAAAAAGTTCTCTACTGGTGGACTCGGATATTACCATGCAAGAAGTTGTGTCATCAGACTCTATAAACGTGTGTAGCTGCAATAGTGGCCCTTCTCTTGAGGATGATTCCTCTGACACATTTCTTAAGTTAGGGTTGCCCTTCCCCAGTTGA 669 0.4245 MARQKIKIKKIDNLTARQVTFSKRRRGIFKKAEELSVLCDAEVGLIIFSATGKLFEYASSSMKDIITRYNQHLHDTNESDRSQKLQLEHYVELSKEVADKTQQLRQMSGEDFEGLNLDDLKQLEKTLETGLEHVVETKETRIMGEIIALQQKGIKLEEENRKLKQKTAMLWKGKSSLLVDSDITMQEVVSSDSINVCSCNSGPSLEDDSSDTFLKLGLPFPS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1001 222 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Apr9g1001 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr9g1001 222 Coils Coil 146 166 - -
Apr9g1001 222 Pfam K-box region 77 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g1001 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr9g1001 222 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 216 - -
Apr9g1001 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
Apr9g1001 222 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g1001 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr9g1001 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr9g1001 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr9g1001 222 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Apr9g1001 222 Gene3D - 14 103 IPR036879 GO:0003677|GO:0046983
Apr9g1001 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr9g1001 222 Coils Coil 90 110 - -
Apr9g1001 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1001 Apr-Chr9 19125127 19133165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1001 1 219 MADS-box Gene Family AT4G24540 55.111 2.00e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr9g1001 K-box 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1001 - - pvy:116106319 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1001 9 19125127 19133165 Apr9g1001 9 19125127 19133165 ECH