Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0999 ATGTCAGAACAATTTGTCAGAGATGTTGAGAGCAAAAAGCTCAAGCACAAGATTGATGAGTCACCTGCCATGGATGCAGTAGATTCAGAGTTGTTGCTGTCTCTAAGTCTTGGAAATAACAAAGGTGAATCCTCATCTAAGTTCACAAGCAAATCCTTGATTGCCCATGAGGGCTCATCATCAAGTTTTGCTCCAAAACTTGTGGAAAACAATAATCATCAATTGTTCAAGCCTAAGCAACGCCAATTCTCATGCAAATTTTGCAATAAGAAATTTCCAAGTTCTCAAGCTTTGGGTGGACACCAAAATGCTCATAGGCGTGAAAGAGTTCTCTCAAGGATGGATAAAGAATTTGAAATGGGAACTTTTGGACTCGGTGCTCATTTTTGTCCATACTCAACCATTGCACATCAACATCACCCCCTTGGTGGTTCACCATCCCTTTATCATGGGACTCACATGCACCCTATGCCTCATATGTCATGGCCTCATTTTGTACCTAGCTATGGTAACCAAGGGTTGCATAAGACTTCCATCCCAAGGCACCAATTTGGGATGACCAACCCTTGGGGTGTGCCTACTAAAACTCCACATGCTCAAACTTCACAAAATTTGTACTTAAGGGATGTGGTTGATTCTCAACATAACCAAGTTCCTTCACTTGATGCATCTAATAGGGCTACCATGGCTCATTCTGGCATTGGTAACCTTTTGGGAAATCAATATACCGGGAACCATCAATTGACATCATCAAGGTCAAATTGCAACAACATGCAATTTCAGTAA 786 0.4148 MSEQFVRDVESKKLKHKIDESPAMDAVDSELLLSLSLGNNKGESSSKFTSKSLIAHEGSSSSFAPKLVENNNHQLFKPKQRQFSCKFCNKKFPSSQALGGHQNAHRRERVLSRMDKEFEMGTFGLGAHFCPYSTIAHQHHPLGGSPSLYHGTHMHPMPHMSWPHFVPSYGNQGLHKTSIPRHQFGMTNPWGVPTKTPHAQTSQNLYLRDVVDSQHNQVPSLDASNRATMAHSGIGNLLGNQYTGNHQLTSSRSNCNNMQFQ* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0999 261 Pfam C2H2-type zinc finger 83 108 - -
Apr9g0999 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Apr9g0999 261 PANTHER ZINC FINGER PROTEIN JAGGED 7 245 IPR045320 GO:0003700
Apr9g0999 261 SUPERFAMILY beta-beta-alpha zinc fingers 80 110 IPR036236 -
Apr9g0999 261 Gene3D Classic Zinc Finger 58 121 - -
Apr9g0999 261 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Apr9g0999 261 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 7 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0999 Apr-Chr9 19107529 19108314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0999 81 171 C2H2 Transcription Factor Family AT1G24625 42.105 7.14e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g0999 zf-C2H2_6 2.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0999 - - aprc:113874385 526.168